Aiping Wu

According to our database, Aiping Wu authored at least 26 papers between 2010 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2025

TransSSVs: a Transformer-based deep learning model for accurate detection of somatic small variants in paired tumor and normal sequencing data.

Jing Meng, Jiangyuan Wang, Jingze Liu, Wenkai Song, Ming Li, Aiping Wu, Taijiao Jiang

Appl. Intell., August, 2025

Influenza virus reassortment patterns exhibit preference and continuity while uncovering cross-species transmission events.

Xiao Ding, Yun Ma, Shicheng Li, Jingze Liu, Luyao Qin, Aiping Wu

Briefings Bioinform., May, 2025

ARNLE model identifies prevalence potential of SARS-CoV-2 variants.

Yuqi Liu, Jing Li, Peihan Li, Yehong Yang, Kaiying Wang, Jinhui Li, Lang Yang, Jiangfeng Liu, Leili Jia, Aiping Wu, Juntao Yang, Peng Li, Hongbin Song

Nat. Mac. Intell., 2025

2024

PREDAC-CNN: predicting antigenic clusters of seasonal influenza A viruses with convolutional neural network.

Jing Meng, Jingze Liu, Wenkai Song, Honglei Li, Jiangyuan Wang, Le Zhang, Yousong Peng, Aiping Wu, Taijiao Jiang

Briefings Bioinform., March, 2024

2023

TeaBERT: An Efficient Knowledge Infused Cross-Lingual Language Model for Mapping Chinese Medical Entities to the Unified Medical Language System.

Luming Chen, Yifan Qi, Aiping Wu, Lizong Deng, Taijiao Jiang

IEEE J. Biomed. Health Informatics, December, 2023

2022

sitePath: a visual tool to identify polymorphism clades and help find fixed and parallel mutations.

Chengyang Ji, Na Han, Yexiao Cheng, Jingzhe Shang, Shenghui Weng, Rong Yang, Hangyu Zhou, Aiping Wu

BMC Bioinform., 2022

An atlas of human viruses provides new insights into diversity and tissue tropism of human viruses.

Sifan Ye, Congyu Lu, Ye Qiu, Heping Zheng, Xingyi Ge, Aiping Wu, Zanxian Xia, Taijiao Jiang, Haizhen Zhu, Yousong Peng

Bioinform., 2022

vsRNAfinder: a novel method for identifying high-confidence viral small RNAs from small RNA-Seq data.

Zena Cai, Ping Fu, Ye Qiu, Aiping Wu, Gaihua Zhang, Yirong Wang, Taijiao Jiang, Xing-Yi Ge, Haizhen Zhu, Yousong Peng

Briefings Bioinform., 2022

Enhancing Cross-lingual Medical Concept Alignment by Leveraging Synonyms and Translations of the Unified Medical Language System.

Luming Chen, Yifan Qi, Aiping Wu, Lizong Deng, Taijiao Jiang

Proceedings of the 24th IEEE Int Conf on High Performance Computing & Communications; 8th Int Conf on Data Science & Systems; 20th Int Conf on Smart City; 8th Int Conf on Dependability in Sensor, 2022

2021

Comparative viromes of <i>Culicoides</i> and mosquitoes reveal their consistency and diversity in viral profiles.

Lin Liu, Qin Shen, Nan Li, Yuwen He, Na Han, Xianyue Wang, Jinxin Meng, Yousong Peng, Mei Pan, Yuting Jin, Taijiao Jiang, Wenjie Tan, Jinglin Wang, Aiping Wu

Briefings Bioinform., November, 2021

Compositional diversity and evolutionary pattern of coronavirus accessory proteins.

Jingzhe Shang, Na Han, Ziyi Chen, Yousong Peng, Liang Li, Hangyu Zhou, Chengyang Ji, Jing Meng, Taijiao Jiang, Aiping Wu

Briefings Bioinform., 2021

Progress and challenge for computational quantification of tissue immune cells.

Ziyi Chen, Aiping Wu

Briefings Bioinform., 2021

Identification and characterization of circRNAs encoded by MERS-CoV, SARS-CoV-1 and SARS-CoV-2.

Zena Cai, Congyu Lu, Jun He, Li Liu, Yuanqiang Zou, Zheng Zhang, Zhaozhong Zhu, Xingyi Ge, Aiping Wu, Taijiao Jiang, Heping Zheng, Yousong Peng

Briefings Bioinform., 2021

2020

Phage protein receptors have multiple interaction partners and high expressions.

Zheng Zhang, Fen Yu, Yuanqiang Zou, Ye Qiu, Aiping Wu, Taijiao Jiang, Yousong Peng

Bioinform., 2020

FluPhenotype - a one-stop platform for early warnings of the influenza A virus.

Congyu Lu, Zena Cai, Yuanqiang Zou, Zheng Zhang, Wenjun Chen, Lizong Deng, Xiangjun Du, Aiping Wu, Lei Yang, Dayan Wang, Yuelong Shu, Taijiao Jiang, Yousong Peng

Bioinform., 2020

Tissue-specific deconvolution of immune cell composition by integrating bulk and single-cell transcriptomes.

Ziyi Chen, Chengyang Ji, Qin Shen, Wei Liu, F. Xiao-Feng Qin, Aiping Wu

Bioinform., 2020

FluReassort: a database for the study of genomic reassortments among influenza viruses.

Xiao Ding, Xuye Yuan, Longfei Mao, Aiping Wu, Taijiao Jiang

Briefings Bioinform., 2020

2019

Cell membrane proteins with high N-glycosylation, high expression and multiple interaction partners are preferred by mammalian viruses as receptors.

Zheng Zhang, Zhaozhong Zhu, Wenjun Chen, Zena Cai, Beibei Xu, Zhiying Tan, Aiping Wu, Xingyi Ge, Xinhong Guo, Zhongyang Tan, Zanxian Xia, Haizhen Zhu, Taijiao Jiang, Yousong Peng

Bioinform., 2019

Identification of Bridging Centrality in Complex Networks.

Wei Liu, Matteo Pellegrini, Aiping Wu

IEEE Access, 2019

2017

cooccurNet: an R package for co-occurrence network construction and analysis.

Yuanqiang Zou, Zhiqiang Wu, Lizong Deng, Aiping Wu, Fan Wu, Kenli Li, Taijiao Jiang, Yousong Peng

Bioinform., 2017

2016

A novel index of protein-protein interface propensity improves interface residue recognition.

Wentao Dai, Aiping Wu, Liang-Xiao Ma, Yi-Xue Li, Taijiao Jiang, Yuan-Yuan Li

BMC Syst. Biol., 2016

PREDAC-H3: a user-friendly platform for antigenic surveillance of human influenza a(H3N2) virus based on hemagglutinin sequences.

Yousong Peng, Lei Yang, Honglei Li, Yuanqiang Zou, Lizong Deng, Aiping Wu, Xiangjun Du, Dayan Wang, Yuelong Shu, Taijiao Jiang

Bioinform., 2016

2015

Uncover protein complexes in E.coli network.

Wei Liu, Aiping Wu

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Exploring protein domain organization by recognition of secondary structure packing interfaces.

Lizong Deng, Aiping Wu, Wentao Dai, Tingrui Song, Ya Cui, Taijiao Jiang

Bioinform., 2014

2011

NCACO-score: An effective main-chain dependent scoring function for structure modeling.

Liqing Tian, Aiping Wu, Yang Cao, Xiaoxi Dong, Yun Hu, Taijiao Jiang

BMC Bioinform., 2011

2010

Correlation of Influenza Virus Excess Mortality with Antigenic Variation: Application to Rapid Estimation of Influenza Mortality Burden.

Aiping Wu, Yousong Peng, Xiangjun Du, Yuelong Shu, Taijiao Jiang

PLoS Comput. Biol., 2010