Matteo Pellegrini

Orcid: 0000-0001-9355-9564

According to our database1, Matteo Pellegrini authored at least 27 papers between 2003 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of two.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

On csauthors.net:

Bibliography

2023
Embed-Search-Align: DNA Sequence Alignment using Transformer Models.
CoRR, 2023

Beyond Obscuration and Visibility: Thoughts on the Different Strategies of Gender-Fair Language in Italian.
Proceedings of the 9th Italian Conference on Computational Linguistics, Venice, Italy, November 30, 2023

2022
Enhancing Derivational Information on Latin Lemmas in the LiLa Knowledge Base. A Structural and Diachronic Extension.
Prague Bull. Math. Linguistics, 2022

The IntAct database: efficient access to fine-grained molecular interaction data.
Nucleic Acids Res., 2022

Editorial: Computational Methods for Analysis of DNA Methylation Data.
Frontiers Bioinform., 2022

The Index Thomisticus Treebank as Linked Data in the LiLa Knowledge Base.
Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

Computational Morphology with OntoLex-Morph.
Proceedings of the 8th Workshop on Linked Data in Linguistics within the 13th Language Resources and Evaluation Conference, 2022

2021
Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples.
Briefings Bioinform., 2021

2020
ACTINN: automated identification of cell types in single cell RNA sequencing.
Bioinform., 2020

The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary framework.
Bioinform., 2020

The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.
Database J. Biol. Databases Curation, 2020

(Stem and Word) Predictability in Italian Verb Paradigms: An Entropy-Based Study Exploiting the New Resource LeFFI.
Proceedings of the Seventh Italian Conference on Computational Linguistics, 2020

2019
Identification of Bridging Centrality in Complex Networks.
IEEE Access, 2019

2018
CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data.
Bioinform., 2018

LatInfLexi: an Inflected Lexicon of Latin Verbs.
Proceedings of the Fifth Italian Conference on Computational Linguistics (CLiC-it 2018), 2018

2016
A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging.
PLoS Comput. Biol., 2016

2014
Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa.
BMC Bioinform., 2014

FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies.
Bioinform., 2014

2011
Regulation of the yeast metabolic cycle by transcription factors with periodic activities.
BMC Syst. Biol., 2011

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.
BMC Bioinform., 2011

2010
BS Seeker: precise mapping for bisulfite sequencing.
BMC Bioinform., 2010

2009
A Primer on Regression Methods for Decoding <i>cis</i>-Regulatory Logic.
PLoS Comput. Biol., 2009

Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression.
BMC Syst. Biol., 2009

2008
Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of <i>Mycobacterium tuberculosis</i>.
PLoS Comput. Biol., 2008

2007
An improved method for identifying functionally linked proteins using phylogenetic profiles.
BMC Bioinform., 2007

2006
Modelling the network of cell cycle transcription factors in the yeast <i>Saccharomyces cerevisiae</i>.
BMC Bioinform., 2006

2003
Inferring protein interactions from phylogenetic distance matrices.
Bioinform., 2003


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