Alessandro Pandini

According to our database, Alessandro Pandini authored at least 15 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

MDGraphEmb: a toolkit for graph embedding and classification of protein conformational ensembles.

Ferdoos Hossein Nezhad, Namir Oues, Massimiliano Meli, Alessandro Pandini

Bioinform., 2025

SOMMD: an R package for the analysis of molecular dynamics simulations using self-organizing map.

Stefano Motta, Lara Callea, Shaziya Ismail Mulla, Hamid Davoudkhani, Laura Bonati, Alessandro Pandini

Bioinform., 2025

2024

MDavocado: Analysis and Visualization of Protein Motion by Time-Dependent Angular Diagrams.

Boris Gomaz, Alessandro Pandini, Aleksandra Marsavelski, Zoran Stefanic

J. Chem. Inf. Model., 2024

PyCoM: a python library for large-scale analysis of residue-residue coevolution data.

Philipp E. Glass, Sabriyeh Alibai, Alessandro Pandini, Sarath Chandra Dantu

Bioinform., 2024

2023

MDSubSampler: <i>a posteriori</i> sampling of important protein conformations from biomolecular simulations.

Namir Oues, Sarath Chandra Dantu, Riktaben Jigarkumar Patel, Alessandro Pandini

Bioinform., 2023

2021

Dynamic Profiling of β-Coronavirus 3CL Mpro Protease Ligand-Binding Sites.

Eunice Cho, Margarida Rosa, Ruhi Anjum, Saman Mehmood, Mariya Soban, Moniza Mujtaba, Khair Bux, Syed Tarique Moin, Mohammad Tanweer, Sarath Chandra Dantu, Alessandro Pandini, Junqi Yin, Heng Ma, Arvind Ramanathan, Barira Islam, Antonia S. J. S. Mey, Debsindhu Bhowmik, Shozeb M. Haider

J. Chem. Inf. Model., 2021

2019

Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II.

Alessandro Pandini, Howard Schulman, Shahid Khan

PLoS Comput. Biol., 2019

2018

Ligand-induced perturbation of the HIF-2α: ARNT dimer dynamics.

Stefano Motta, Claudia Minici, Dario Corrada, Laura Bonati, Alessandro Pandini

PLoS Comput. Biol., 2018

In silico identification of rescue sites by double force scanning.

Matteo Tiberti, Alessandro Pandini, Franca Fraternali, Arianna Fornili

Bioinform., 2018

Deep Autoencoders for Additional Insight into Protein Dynamics.

Mihai Teletin, Gabriela Czibula, Maria-Iuliana Bocicor, Silvana Iuliana Albert, Alessandro Pandini

Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2018, 2018

2013

GSATools: analysis of allosteric communication and functional local motions using a structural alphabet.

Alessandro Pandini, Arianna Fornili, Franca Fraternali, Jens Kleinjung

Bioinform., 2013

2011

Predicting the accuracy of protein-ligand docking on homology models.

Annalisa Bordogna, Alessandro Pandini, Laura Bonati

J. Comput. Chem., 2011

Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps.

Domenico Fraccalvieri, Alessandro Pandini, Fabio Stella, Laura Bonati

BMC Bioinform., 2011

2010

Structural alphabets derived from attractors in conformational space.

Alessandro Pandini, Arianna Fornili, Jens Kleinjung

BMC Bioinform., 2010

2007

MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database.

Alessandro Pandini, Laura Bonati, Franca Fraternali, Jens Kleinjung

Bioinform., 2007