Alex Aliper

According to our database, Alex Aliper authored at least 14 papers between 2016 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

MMAI Gym for Science: Training Liquid Foundation Models for Drug Discovery.

Maksim Kuznetsov, Zulfat Miftahutdinov, Rim Shayakhmetov, Mikolaj Mizera, Roman Schutski, Bogdan Zagribelnyy, Ivan Ilin, Nikita Bondarev, Thomas MacDougall, Mathieu Reymond, Mihir Bafna, Kaeli Kaymak-Loveless, Eugene Babin, Maxim Malkov, Mathias Lechner, Ramin M. Hasani, Alexander Amini, Vladimir Aladinskiy, Alex Aliper, Alex Zhavoronkov

CoRR, March, 2026

When Single Answer Is Not Enough: Rethinking Single-Step Retrosynthesis Benchmarks for LLMs.

Bogdan Zagribelnyy, Ivan Ilin, Maksim Kuznetsov, Nikita Bondarev, Roman Schutski, Thomas MacDougall, Rim Shayakhmetov, Zulfat Miftakhutdinov, Mikolaj Mizera, Vladimir Aladinskiy, Alex Aliper, Alex Zhavoronkov

CoRR, February, 2026

2025

nach0-pc: Multi-task Language Model with Molecular Point Cloud Encoder.

Maksim Kuznetsov, Airat Valiev, Alex Aliper, Daniil Polykovskiy, Elena Tutubalina, Rim Shayakhmetov, Zulfat Miftahutdinov

Proceedings of the Thirty-Ninth AAAI Conference on Artificial Intelligence, 2025

2024

AttenhERG: a reliable and interpretable graph neural network framework for predicting hERG channel blockers.

Tianbiao Yang, Xiaoyu Ding, Elizabeth McMichael, Frank W. Pun, Alex Aliper, Feng Ren, Alex Zhavoronkov, Xiao Ding

J. Cheminformatics, December, 2024

COSMIC: Molecular Conformation Space Modeling in Internal Coordinates with an Adversarial Framework.

Maksim Kuznetsov, Fedor Ryabov, Roman Schutski, Rim Shayakhmetov, Yen-Chu Lin, Alex Aliper, Daniil Polykovskiy

J. Chem. Inf. Model., 2024

PandaOmics: An AI-Driven Platform for Therapeutic Target and Biomarker Discovery.

Petrina Kamya, Ivan V. Ozerov, Frank W. Pun, Kyle Tretina, Tatyana Fokina, Shan Chen, Vladimir Naumov, Xi Long, Sha Lin, Mikhail Korzinkin, Daniil Polykovskiy, Alex Aliper, Feng Ren, Alex Zhavoronkov

J. Chem. Inf. Model., 2024

Quantum Computing-Enhanced Algorithm Unveils Novel Inhibitors for KRAS.

Mohammad Ghazi Vakili, Christoph Gorgulla, AkshatKumar Nigam, Dmitry Bezrukov, Daniel Varoli, Alex Aliper, Daniil Polykovskiy, Krishna M. Padmanabha Das, Jamie Snider, Anna Lyakisheva, Ardalan Hosseini Mansob, Zhong Yao, Lela Bitar, Eugene Radchenko, Xiao Ding, Jinxin Liu, Fanye Meng, Feng Ren, Yudong Cao, Igor Stagljar, Alán Aspuru-Guzik, Alex Zhavoronkov

CoRR, 2024

2023

Exploring the Advantages of Quantum Generative Adversarial Networks in Generative Chemistry.

Po-Yu Kao, Ya-Chu Yang, Wei-Yin Chiang, Jen-Yueh Hsiao, Yudong Cao, Alex Aliper, Feng Ren, Alán Aspuru-Guzik, Alex Zhavoronkov, Min-Hsiu Hsieh, Yen-Chu Lin

J. Chem. Inf. Model., June, 2023

Chemistry42: An AI-Driven Platform for Molecular Design and Optimization.

Yan A. Ivanenkov, Daniil Polykovskiy, Dmitry Bezrukov, Bogdan Zagribelnyy, Vladimir Aladinskiy, Petrina Kamya, Alex Aliper, Feng Ren, Alex Zhavoronkov

J. Chem. Inf. Model., February, 2023

nach0: Multimodal Natural and Chemical Languages Foundation Model.

Micha Livne, Zulfat Miftahutdinov, Elena Tutubalina, Maksim Kuznetsov, Daniil Polykovskiy, Annika Brundyn, Aastha Jhunjhunwala, Anthony Costa, Alex Aliper, Alex Zhavoronkov

CoRR, 2023

2022

AlphaFold Accelerates Artificial Intelligence Powered Drug Discovery: Efficient Discovery of a Novel Cyclin-dependent Kinase 20 (CDK20) Small Molecule Inhibitor.

Feng Ren, Xiao Ding, Min Zheng, Mikhail Korzinkin, Xin Cai, Wei Zhu, Alexey Mantsyzov, Alex Aliper, Vladimir Aladinskiy, Zhongying Cao, Shanshan Kong, Xi Long, Bonnie Hei Man Liu, Yingtao Liu, Vladimir Naumov, Anastasia Shneyderman, Ivan V. Ozerov, Ju Wang, Frank W. Pun, Alán Aspuru-Guzik, Michael Levitt, Alex Zhavoronkov

CoRR, 2022

2021

COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity.

Vladimir Naumov, Evgeny Putin, Stefan Pushkov, Ekaterina Kozlova, Konstantin Romantsov, Alexander A. Kalashnikov, Fedor Galkin, Nina Tihonova, Anastasia Shneyderman, Egor Galkin, Arsenii Zinkevich, Stephanie M. Cope, Ramanathan Sethuraman, Tudor I. Oprea, Alexander T. Pearson, Savas Tay, Nishant Agrawal, Alexey Dubovenko, Quentin Vanhaelen, Ivan Ozerov, Alex Aliper, Evgeny Izumchenko, Alex Zhavoronkov

PLoS Comput. Biol., 2021

Chemistry42: An AI-based platform for de novo molecular design.

Yan A. Ivanenkov, Alexander Zhebrak, Dmitry Bezrukov, Bogdan Zagribelnyy, Vladimir Aladinskiy, Daniil Polykovskiy, Evgeny Putin, Petrina Kamya, Alexander Aliper, Alex Zhavoronkov

CoRR, 2021

2016

Aging Chart: a community resource for rapid exploratory pathway analysis of age-related processes.

Alexey A. Moskalev, Svetlana Zhikrivetskaya, Mikhail Shaposhnikov, Evgenia Dobrovolskaya, Roman Gurinovich, Oleg Kuryan, Aleksandr Pashuk, Leslie C. Jellen, Alex Aliper, Alex Peregudov, Alex Zhavoronkov

Nucleic Acids Res., 2016