Alexander Derry

According to our database, Alexander Derry authored at least 8 papers between 2020 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Unsupervised learning reveals landscape of local structural motifs across protein classes.

Alexander Derry, Haim Krupkin, Alp Tartici, Russ B. Altman

Bioinform., 2025

2024

Prospector Heads: Generalized Feature Attribution for Large Models & Data.

Gautam Machiraju, Alexander Derry, Arjun D. Desai, Neel Guha, Amir-Hossein Karimi, James Zou, Russ B. Altman, Christopher Ré, Parag Mallick

Proceedings of the Forty-first International Conference on Machine Learning, 2024

2023

Data for PARSE (Derry & Altman 2023).

Alexander Derry, Russ B. Altman

Dataset, October, 2023

2022

Data for COLLAPSE: A representation learning framework for identification and characterization of protein structural sites.

Alexander Derry, Russ B. Altman

Dataset, July, 2022

2021

Data for "Training data composition affects performance of protein structure analysis algorithms" by A. Derry, K. A. Carpenter, & R. B. Altman.

Alexander Derry, Kristy A. Carpenter, Russ B. Altman

Dataset, September, 2021

ATOM3D: Tasks on Molecules in Three Dimensions.

Raphael J. L. Townshend, Martin Vögele, Patricia Suriana, Alexander Derry, Alexander S. Powers, Yianni Laloudakis, Sidhika Balachandar, Bowen Jing, Brandon M. Anderson, Stephan Eismann, Risi Kondor, Russ B. Altman, Ron O. Dror

Proceedings of the Neural Information Processing Systems Track on Datasets and Benchmarks 1, 2021

2020

ATOM3D: Tasks On Molecules in Three Dimensions.

Raphael J. L. Townshend, Martin Vögele, Patricia Suriana, Alexander Derry, Alexander S. Powers, Yianni Laloudakis, Sidhika Balachandar, Brandon M. Anderson, Stephan Eismann, Risi Kondor, Russ B. Altman, Ron O. Dror

CoRR, 2020

A Literature-Based Knowledge Graph Embedding Method for Identifying Drug RepurposingOpportunities in Rare Diseases.

Daniel N. Sosa, Alexander Derry, Margaret G. Guo, Eric Wei, Connor Brinton, Russ B. Altman

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020