Ron O. Dror

Orcid: 0000-0002-6418-2793

According to our database1, Ron O. Dror authored at least 44 papers between 2000 and 2023.

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Bibliography

2023
Enhancing Ligand Pose Sampling for Molecular Docking.
CoRR, 2023

FlexVDW: A machine learning approach to account for protein flexibility in ligand docking.
CoRR, 2023

Harnessing Simulation for Molecular Embeddings.
CoRR, 2023

Geometric Latent Diffusion Models for 3D Molecule Generation.
Proceedings of the International Conference on Machine Learning, 2023

2021
Delineating the Ligand-Receptor Interactions That Lead to Biased Signaling at the μ-Opioid Receptor.
J. Chem. Inf. Model., 2021

Equivariant Graph Neural Networks for 3D Macromolecular Structure.
CoRR, 2021


ATOM3D: Tasks on Molecules in Three Dimensions.
Proceedings of the Neural Information Processing Systems Track on Datasets and Benchmarks 1, 2021

Learning from Protein Structure with Geometric Vector Perceptrons.
Proceedings of the 9th International Conference on Learning Representations, 2021

2020
ATOM3D: Tasks On Molecules in Three Dimensions.
CoRR, 2020

Protein model quality assessment using rotation-equivariant, hierarchical neural networks.
CoRR, 2020

Geometric Prediction: Moving Beyond Scalars.
CoRR, 2020

Hierarchical, rotation-equivariant neural networks to predict the structure of protein complexes.
CoRR, 2020

2019
End-to-End Learning on 3D Protein Structure for Interface Prediction.
Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

2018
Generalizable Protein Interface Prediction with End-to-End Learning.
CoRR, 2018

2016
Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations.
PLoS Comput. Biol., 2016

2014

2013
Extending the Generality of Molecular Dynamics Simulations on a Special-Purpose Machine.
Proceedings of the 27th IEEE International Symposium on Parallel and Distributed Processing, 2013

Hardware support for fine-grained event-driven computation in Anton 2.
Proceedings of the Architectural Support for Programming Languages and Operating Systems, 2013

2011
Anton, A Special-Purpose Molecular Simulation Machine.
Proceedings of the Encyclopedia of Parallel Computing, 2011

Overcoming Communication Latency Barriers in Massively Parallel Scientific Computation.
IEEE Micro, 2011

Parallel random numbers: as easy as 1, 2, 3.
Proceedings of the Conference on High Performance Computing Networking, 2011

Tight Certification Techniques for Digit-by-Rounding Algorithms with Application to a New 1/sqrt(x) Design.
Proceedings of the 20th IEEE Symposium on Computer Arithmetic, 2011

Radix-8 Digit-by-Rounding: Achieving High-Performance Reciprocals, Square Roots, and Reciprocal Square Roots.
Proceedings of the 20th IEEE Symposium on Computer Arithmetic, 2011

2010
Improved twiddle access for fast fourier transforms.
IEEE Trans. Signal Process., 2010

Exploiting 162-Nanosecond End-to-End Communication Latency on Anton.
Proceedings of the Conference on High Performance Computing Networking, 2010

Accelerating Parallel Analysis of Scientific Simulation Data via Zazen.
Proceedings of the 8th USENIX Conference on File and Storage Technologies, 2010

2009
A 32x32x32, spatially distributed 3D FFT in four microseconds on Anton.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009


2008
Anton, a special-purpose machine for molecular dynamics simulation.
Commun. ACM, 2008

A scalable parallel framework for analyzing terascale molecular dynamics simulation trajectories.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008

Hierarchical simulation-based verification of Anton, a special-purpose parallel machine.
Proceedings of the 26th International Conference on Computer Design, 2008

High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation.
Proceedings of the 14th International Conference on High-Performance Computer Architecture (HPCA-14 2008), 2008

Incorporating flexibility in Anton, a specialized machine for molecular dynamics simulation.
Proceedings of the 14th International Conference on High-Performance Computer Architecture (HPCA-14 2008), 2008

Early formal verification of conditional coverage points to identify intrinsically hard-to-verify logic.
Proceedings of the 45th Design Automation Conference, 2008

Simulation and embedded software development for Anton, a parallel machine with heterogeneous multicore ASICs.
Proceedings of the 6th International Conference on Hardware/Software Codesign and System Synthesis, 2008

2007
Zonal methods for the parallel execution of range-limited N-body simulations.
J. Comput. Phys., 2007

2006
Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

2003
Bayesian Estimation of Transcript Levels Using a General Model of Array Measurement Noise.
J. Comput. Biol., 2003

2002
Surface reflectance recognition and real-world illumination statistics.
PhD thesis, 2002

A bayesian approach to transcript estimation from gene array data: the BEAM technique.
Proceedings of the Sixth Annual International Conference on Computational Biology, 2002

2001
Estimating surface reflectance properties from images under unknown illumination.
Proceedings of the Human Vision and Electronic Imaging VI, 2001

Statistics of Real-World Illumination.
Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), 2001

2000
The Role of Natural Image Statistics in Biological Motion Estimation.
Proceedings of the Biologically Motivated Computer Vision, 2000


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