Ammar Ammar

According to our database, Ammar Ammar authored at least 16 papers between 2007 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources.

Yojana Gadiya, Javier Millán Acosta, Ammar Ammar, Alejandro Adriaque Lozano, Delano Wetstede, Dominik Martinát, Ana Claudia Sima, Hailiang Mei, Egon L. Willighagen, Tooba Abbassi-Daloii

Bioinform., 2026

2024

From papers to RDF-based integration of physicochemical data and adverse outcome pathways for nanomaterials.

Jeaphianne P. M. van Rijn, Marvin Martens, Ammar Ammar, Mihaela Roxana Cimpan, Valerie Fessard, Peter Hoet, Nina Jeliazkova, Sivakumar Murugadoss, Ivana Vinkovic Vrcek, Egon L. Willighagen

J. Cheminformatics, December, 2024

Wikidata subsetting: Approaches, tools, and evaluation.

Seyed Amir Hosseini Beghaeiraveri, José Emilio Labra Gayo, Andra Waagmeester, Ammar Ammar, Carolina González, Denise N. Slenter, Sabah Ul-Hasan, Egon L. Willighagen, Fiona McNeill, Alasdair J. G. Gray

Semantic Web, 2024

Nanosafety data made interoperable using semantic modeling and linked-data knowledge graphs.

Ammar Ammar, Egon L. Willighagen

Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2024

BioDataFuse: Enhancing data interoperability through modular queries and knowledge graph construction.

Tooba Abbassi-Daloii, Yojana Gadiya, Ammar Ammar, Egon L. Willighagen, Ana Claudia Sima, Hasan Balci

Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2024

2023

PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity.

Ammar Ammar, Rachel Cavill, Chris T. A. Evelo, Egon L. Willighagen

J. Cheminformatics, December, 2023

2022

PSnpBind: a database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow.

Ammar Ammar, Rachel Cavill, Chris T. A. Evelo, Egon L. Willighagen

J. Cheminformatics, 2022

2021

WikiPathways: connecting communities.

Marvin Martens, Ammar Ammar, Anders Riutta, Andra Waagmeester, Denise N. Slenter, Kristina Hanspers, Ryan A. Miller, Daniela Digles, Elisson N. Lopes, Friederike Ehrhart, Lauren J. Dupuis, Laurent A. Winckers, Susan L. Coort, Egon L. Willighagen, Chris T. A. Evelo, Alexander R. Pico, Martina Kutmon

Nucleic Acids Res., 2021

Semantic Answer Type Prediction by Using BERT classifier and Rule-based Ranking Strategies.

Xiao Ning, Ammar Ammar, Arif Yilmaz, Shervin Mehryar, Remzi Celebi

Proceedings of the SeMantic Answer Type and Relation Prediction Task at ISWC 2021 Semantic Web Challenge (SMART2021) co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021

2020

A Methodology for Hierarchical Classification of Semantic Answer Types of Questions.

Ammar Ammar, Shervin Mehryar, Remzi Celebi

Proceedings of the SeMantic AnsweR Type prediction task (SMART) at ISWC 2020 Semantic Web Challenge co-located with the 19th International Semantic Web Conference (ISWC 2020), 2020

2019

Fact Validation with Knowledge Graph Embeddings.

Ammar Ammar, Remzi Celebi

Proceedings of the ISWC 2019 Satellite Tracks (Posters & Demonstrations, 2019

2015

Ranked personalized recommendations using discrete choice models.

Ammar Ammar

PhD thesis, 2015

2014

What's your choice?: learning the mixed multi-nomial.

Ammar Ammar, Sewoong Oh, Devavrat Shah, Luis Filipe Voloch

Proceedings of the ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems, 2014

2012

Efficient rank aggregation using partial data.

Ammar Ammar, Devavrat Shah

Proceedings of the ACM SIGMETRICS/PERFORMANCE Joint International Conference on Measurement and Modeling of Computer Systems, 2012

2011

Ranking: Compare, don't score.

Ammar Ammar, Devavrat Shah

Proceedings of the 49th Annual Allerton Conference on Communication, 2011

2007

CSAIL at TREC 2007 Question Answering.

Boris Katz, Sue Felshin, Gregory Marton, Federico Mora, Yuan Kui Shen, Gabriel Zaccak, Ammar Ammar, Eric Eisner, Asli Turgut, Linda Brown Westrick

Proceedings of The Sixteenth Text REtrieval Conference, 2007