Andre S. Ribeiro
Orcid: 0000-0002-7255-5211
According to our database1,
Andre S. Ribeiro
authored at least 51 papers
between 2006 and 2022.
Collaborative distances:
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Bibliography
2022
PLoS Comput. Biol., 2022
2020
Stochastic models coupling gene expression and partitioning in cell division in <i>Escherichia coli</i>.
Biosyst., 2020
2019
Mean and Variability in RNA Polymerase Numbers Are Correlated to the Mean but Not the Variability in Size and Composition of Escherichia Coli Cells.
Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019
2018
Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli.
Proceedings of the Computational Methods in Systems Biology, 2018
2017
sgnesR: An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters.
BMC Bioinform., 2017
Estimating Effects of Extrinsic Noise on Model Genes and Circuits with Empirically Validated Kinetics.
Proceedings of the Artificial Life and Evolutionary Computation - 12th Italian Workshop, 2017
Proceedings of the 9th International Conference on Bioinformatics and Biomedical Technology, 2017
Proceedings of the Fourteenth European Conference Artificial Life, 2017
Automatic Classification of Z-ring Formation Stages at the Single Cell Level in Escherichia Coli by Machine Learning.
Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2017), 2017
2016
Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements.
PLoS Comput. Biol., 2016
Characterizing rate limiting steps in transcription from RNA production times in live cells.
Bioinform., 2016
Generator Platform of Benchmark Time-Lapsed Images Development of Cell Tracking Algorithms: Implementation of New Features Towards a Realistic Simulation of the Cell Spatial and Temporal Organization.
Proceedings of the Simulation and Modeling Methodologies, Technologies and Applications, 2016
An Image Generator Platform to Improve Cell Tracking Algorithms - Simulation of Objects of Various Morphologies, Kinetics and Clustering.
Proceedings of the 6th International Conference on Simulation and Modeling Methodologies, 2016
Quantitative Estimation of Long-living Fluorescent Molecules from Temporal Fluorescence Intensity Data Corrupted by Nonzero-mean Noise.
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016
Robustness to Sub-optimal Temperatures of the Processes of Tsr Cluster Formation and Positioning in Escherichia Coli.
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016
2015
Bioinform., 2015
Proceedings of the Image Analysis and Processing - ICIAP 2015, 2015
2014
Bioinform., 2014
Proceedings of the Computational Methods in Systems Biology, 2014
2013
BMC Syst. Biol., 2013
Cell segmentation by multi-resolution analysis and maximum likelihood estimation (MAMLE).
BMC Bioinform., 2013
ZebIAT, an image analysis tool for registering zebrafish embryos and quantifying cancer metastasis.
BMC Bioinform., 2013
CellAging: a tool to study segregation and partitioning in division in cell lineages of <i>Escherichia coli</i>.
Bioinform., 2013
Proceedings of the Twelfth European Conference on the Synthesis and Simulation of Living Systems: Advances in Artificial Life, 2013
2012
<i>In silico</i> analysis of division times of <i>Escherichia coli</i> populations as a function of the partitioning scheme of non-functional proteins.
Silico Biol., 2012
Comput. Biol. Chem., 2012
Detecting sequence dependent transcriptional pauses from RNA and protein number time series.
BMC Bioinform., 2012
Biosyst., 2012
SGNS2: a compartmentalized stochastic chemical kinetics simulator for dynamic cell populations.
Bioinform., 2012
Proceedings of the Computational Methods in Systems Biology, 2012
Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics.
Proceedings of the Computational Methods in Systems Biology, 2012
2011
Trans. Comp. Sys. Biology, 2011
Inference of Kinetic Parameters of Delayed Stochastic Models of Gene Expression Using a Markov Chain Approximation.
EURASIP J. Bioinform. Syst. Biol., 2011
In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps.
BMC Syst. Biol., 2011
Stochastic sequence-level model of coupled transcription and translation in prokaryotes.
BMC Bioinform., 2011
Diversity of temporal correlations between genes in models of noisy and noiseless gene networks.
Biosyst., 2011
Automatic detection of changes in the dynamics of delayed stochastic gene networks and <i>in vivo</i> production of RNA molecules in <i>Escherichia coli</i>.
Bioinform., 2011
2010
Information Flow in Systems of Interacting Agents as a Function of Local and Global Topological Features.
Proceedings of the Computational Social Network Analysis, 2010
PLoS Comput. Biol., 2010
BMC Syst. Biol., 2010
Adapt. Behav., 2010
2009
J. Comput. Biol., 2009
Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources.
Bioinform., 2009
2008
Optimize Observational Time Points to Maximize the Inferability of Gene Networks.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
2007
2006
J. Comput. Biol., 2006