Olli Yli-Harja
Orcid: 0000-0001-8581-4414
According to our database1,
Olli Yli-Harja
authored at least 87 papers
between 1991 and 2022.
Collaborative distances:
Collaborative distances:
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Bibliography
2022
Identification of feasible pathway information for c-di-GMP binding proteins in cellulose production.
CoRR, 2022
2020
Explainable artificial intelligence and machine learning: A reality rooted perspective.
WIREs Data Mining Knowl. Discov., 2020
Artificial Intelligence: A Clarification of Misconceptions, Myths and Desired Status.
Frontiers Artif. Intell., 2020
A clarification of misconceptions, myths and desired status of artificial intelligence.
CoRR, 2020
2019
Mach. Learn. Knowl. Extr., 2019
2018
Frontiers Big Data, 2018
Understanding the World Economy in Terms of Networks: A Survey of Data-Based Network Science Approaches on Economic Networks.
Frontiers Appl. Math. Stat., 2018
2017
sgnesR: An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters.
BMC Bioinform., 2017
Briefings Bioinform., 2017
2016
Nano Commun. Networks, 2016
Proceedings of the Advances in Artificial Life, Evolutionary Computation, and Systems Chemistry, 2016
2015
Mapping dynamical states to structural classes for Boolean networks using a classification algorithm.
Proceedings of the 23rd European Signal Processing Conference, 2015
2013
A novel method for splitting clumps of convex objects incorporating image intensity and using rectangular window-based concavity point-pair search.
Pattern Recognit., 2013
BMC Syst. Biol., 2013
Multi-scale Gaussian representation and outline-learning based cell image segmentation.
BMC Bioinform., 2013
Cell segmentation by multi-resolution analysis and maximum likelihood estimation (MAMLE).
BMC Bioinform., 2013
ZebIAT, an image analysis tool for registering zebrafish embryos and quantifying cancer metastasis.
BMC Bioinform., 2013
Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing, 2013
Graph cut and image intensity-based splitting improves nuclei segmentation in high-content screening.
Proceedings of the Image Processing: Algorithms and Systems XI, 2013
2012
Biosyst., 2012
Proceedings of the Computational Methods in Systems Biology, 2012
2011
Trans. Comp. Sys. Biology, 2011
Frontiers Comput. Neurosci., 2011
Inference of Kinetic Parameters of Delayed Stochastic Models of Gene Expression Using a Markov Chain Approximation.
EURASIP J. Bioinform. Syst. Biol., 2011
In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps.
BMC Syst. Biol., 2011
Stochastic sequence-level model of coupled transcription and translation in prokaryotes.
BMC Bioinform., 2011
A Beta-Mixture Model for Dimensionality Reduction, Sample Classification and Analysis.
BMC Bioinform., 2011
Diversity of temporal correlations between genes in models of noisy and noiseless gene networks.
Biosyst., 2011
Automatic detection of changes in the dynamics of delayed stochastic gene networks and <i>in vivo</i> production of RNA molecules in <i>Escherichia coli</i>.
Bioinform., 2011
2010
PLoS Comput. Biol., 2010
Novel Data Fusion Method and Exploration of Multiple Information Sources for Transcription Factor Target Gene Prediction.
EURASIP J. Adv. Signal Process., 2010
BMC Syst. Biol., 2010
Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images.
BMC Bioinform., 2010
Proceedings of the International Conference on Image Processing, 2010
2009
J. Comput. Biol., 2009
A joint finite mixture model for clustering genes from independent Gaussian and beta distributed data.
BMC Bioinform., 2009
Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources.
Bioinform., 2009
2008
Towards the experimental evaluation of novel supervised fuzzy adaptive resonance theory for pattern classification.
Pattern Recognit. Lett., 2008
PLoS Comput. Biol., 2008
Synthetic Images of High-Throughput Microscopy for Validation of Image Analysis Methods.
Proc. IEEE, 2008
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008
Proceedings of the 2008 16th European Signal Processing Conference, 2008
sBGMM: A Stratified Beta-Gaussian Mixture Model for Clustering Genes with Multiple Data Sources.
Proceedings of the International Conference on Biocomputation, 2008
2007
Computational Framework for Simulating Fluorescence Microscope Images With Cell Populations.
IEEE Trans. Medical Imaging, 2007
Computational Methods for Estimation of Cell Cycle Phase Distributions of Yeast Cells.
EURASIP J. Bioinform. Syst. Biol., 2007
Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data.
BMC Bioinform., 2007
2006
Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks.
Signal Process., 2006
Neurocomputing, 2006
Comparison of automated parameter estimation methods for neuronal signaling networks.
Neurocomputing, 2006
Proceedings of the Image Processing: Algorithms and Systems IV, 2006
Three-Dimensional Digital Image Analysis of Immunostained Neurons in Thick Tissue Sections.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
2005
IEEE Trans. Medical Imaging, 2005
<i>In silico </i>microdissection of microarray data from heterogeneous cell populations.
BMC Bioinform., 2005
BMC Bioinform., 2005
Bioinform., 2005
Proceedings of the 2005 International Conference on Image Processing, 2005
2004
A strategy for identifying putative causes of gene expression variation in human cancers.
J. Frankl. Inst., 2004
EURASIP J. Adv. Signal Process., 2004
2003
Estimation and inversion of the effects of cell population asynchrony in gene expression time-series.
Signal Process., 2003
Mach. Learn., 2003
Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps.
Mach. Learn., 2003
Bioinform., 2003
Proceedings of the Third SIAM International Conference on Data Mining, 2003
Identifying underlying factors in breast cancer using independent component analysis.
Proceedings of the NNSP 2003, 2003
Proceedings of the Image Processing: Algorithms and Systems II, 2003
Proceedings of the Image Processing: Algorithms and Systems II, 2003
Proceedings of the Image Processing: Algorithms and Systems II, 2003
2002
Proceedings of the Image Processing: Algorithms and Systems, 2002
Proceedings of the Image Processing: Algorithms and Systems, 2002
2001
Perceptual Issues in Music Pattern Recognition: Complexity of Rhythm and Key Finding.
Comput. Humanit., 2001
2000
Proceedings of the 10th European Signal Processing Conference, 2000
1999
Graph-based smoothing of class data with applications in musical key finding.
Proceedings of the IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing (NSIP'99), 1999
Correlation properties of cascaded recursive median filters.
Proceedings of the IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing (NSIP'99), 1999
Proceedings of the Nonlinear Image Processing X, 1999
1994
IEEE Signal Process. Lett., 1994
1991
Analysis of the properties of median and weighted median filters using threshold logic and stack filter representation.
IEEE Trans. Signal Process., 1991