Baozhen Shan

According to our database, Baozhen Shan authored at least 15 papers between 2003 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

De novo sequencing of multiple SILAC-based tandem mass spectra.

Fang Han, Baozhen Shan, Kaizhong Zhang

Proceedings of the 21st 2022 International Conference on Cognitive Informatics & Cognitive Computing, 2022

2021

ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition.

Wenju Zhang, Zhewei Liang, Xin Chen, Lei Xin, Baozhen Shan, Zhigang Luo, Ming Li

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices.

Rui Qiao, Ngoc Hieu Tran, Lei Xin, Xin Chen, Ming Li, Baozhen Shan, Ali Ghodsi

Nat. Mach. Intell., 2021

2020

Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines.

Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen, Baozhen Shan, Ming Li

Nat. Mach. Intell., 2020

PointIso: Point Cloud Based Deep Learning Model for Detecting Arbitrary-Precision Peptide Features in LC-MS Map through Attention Based Segmentation.

Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei Xin, Baozhen Shan, Ming Li

CoRR, 2020

2019

DeepNovoV2: Better de novo peptide sequencing with deep learning.

Rui Qiao, Ngoc Hieu Tran, Ming Li, Lei Xin, Baozhen Shan, Ali Ghodsi

CoRR, 2019

2018

DeepIso: A Deep Learning Model for Peptide Feature Detection.

Fatema Tuz Zohora, Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li

CoRR, 2018

2017

De novo peptide sequencing by deep learning.

Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li

Proc. Natl. Acad. Sci. USA, 2017

Protein identification with deep learning: from abc to xyz.

Ngoc Hieu Tran, Zachariah Levine, Lei Xin, Baozhen Shan, Ming Li

CoRR, 2017

DISC: DISulfide linkage Characterization from tandem mass spectra.

Yi Liu, Weiping Sun, Baozhen Shan, Kaizhong Zhang

Bioinform., 2017

2010

Better score function for peptide identification with ETD MS/MS spectra.

Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma

BMC Bioinform., 2010

2008

Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry.

Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie

J. Bioinform. Comput. Biol., 2008

2007

Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry.

Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2004

Stochastic Context-Free Graph Grammars for Glycoprotein Modelling.

Baozhen Shan

Proceedings of the Implementation and Application of Automata, 2004

2003

Fast Algorithms for Extended Regular Expression Matching and Searching.

Lucian Ilie, Baozhen Shan, Sheng Yu

Proceedings of the STACS 2003, 20th Annual Symposium on Theoretical Aspects of Computer Science, Berlin, Germany, February 27, 2003