Kaizhong Zhang

Proceedings of the 21st 2022 International Conference on Cognitive Informatics & Cognitive Computing, 2022

2020

MHCherryPan: a novel pan-specific model for binding affinity prediction of class I HLA-peptide.

[BibT_eX]

[DOI]

Xuezhi Xie

Yuanyuan Han

Int. J. Data Min. Bioinform., 2020

2019

An Improved Approach for N-Linked Glycan Structure Identification from HCD MS/MS Spectra.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Patch-Based and Tensor-Patch-Based Dimension Reduction Methods for Hyperspectral Images.

[BibT_eX]

[DOI]

Boyu Feng

Proceedings of the 2019 IEEE International Geoscience and Remote Sensing Symposium, 2019

MHCherryPan. a novel model to predict the binding affinity of pan-specific class I HLA-peptide.

[BibT_eX]

[DOI]

Xuezhi Xie

Yuanyuan Han

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

An approach for N-linked glycan identification from MS/MS spectra by target-decoy strategy.

[BibT_eX]

[DOI]

Weiping Sun

Yi Liu

Comput. Biol. Chem., 2018

2017

An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

NBPMF: Novel Peptide Mass Fingerprinting Based on Network Inference.

[BibT_eX]

[DOI]

Gilles A. Lajoie

Int. J. Cogn. Informatics Nat. Intell., 2017

DISC: DISulfide linkage Characterization from tandem mass spectra.

[BibT_eX]

[DOI]

Bioinform., 2017

NBPMF: Novel network-based inference methods for peptide mass fingerprinting.

[BibT_eX]

[DOI]

Gilles A. Lajoie

Proceedings of the 16th IEEE International Conference on Cognitive Informatics & Cognitive Computing, 2017

2016

Spectra library assisted de novo peptide sequencing for HCD and ETD spectra pairs.

[BibT_eX]

[DOI]

Yan Yan

BMC Bioinform., 2016

Similarity metric induced metrics with application in machine learning and bioinformatics.

[BibT_eX]

[DOI]

Proceedings of the 15th IEEE International Conference on Cognitive Informatics & Cognitive Computing , 2016

2015

A Novel Algorithm for Glycan de novo Sequencing Using Tandem Mass Spectrometry.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

An Approach for Matching Mixture MS/MS Spectra with a Pair of Peptide Sequences in a Protein Database.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

2014

Optimizing Spaced $k$-mer Neighbors for Efficient Filtration in Protein Similarity Search.

[BibT_eX]

[DOI]

Weiming Li

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

Algorithms for local similarity between forests.

[BibT_eX]

[DOI]

J. Comb. Optim., 2014

An improved algorithm for tree edit distance with applications for RNA secondary structure comparison.

[BibT_eX]

[DOI]

J. Comb. Optim., 2014

Pattern Matching and Local Alignment for RNA Structures.

[BibT_eX]

[DOI]

CoRR, 2014

An Effective Algorithm for Peptide de novo Sequencing from Mixture MS/MS Spectra.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

2012

A Method for Discovering Common Patterns from Two RNA Secondary Structures and its Application to Structural Repeat Detection.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2012

Algorithms for Forest Local Similarity.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Optimization and Applications, 2012

Efficient filtration for similarity search with spaced k-mer neighbors.

[BibT_eX]

[DOI]

Weiming Li

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2010

Ancient Chinese zither (guqin) music recovery with support vector machine.

[BibT_eX]

[DOI]

ACM Journal on Computing and Cultural Heritage, 2010

On Comparing Two Structured RNA Multiple alignments.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2010

On the Longest Common Rigid Subsequence Problem.

[BibT_eX]

[DOI]

Algorithmica, 2010

Algorithms for Forest Pattern Matching.

[BibT_eX]

[DOI]

Yunkun Zhu

Proceedings of the Combinatorial Pattern Matching, 21st Annual Symposium, 2010

2009

On the similarity metric and the distance metric.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2009

Edge Extraction with Gradient Directions.

[BibT_eX]

Proceedings of the 2009 International Conference on Image Processing, 2009

Amino Acid Classification and Hash Seeds for Homology Search.

[BibT_eX]

[DOI]

Weiming Li

Proceedings of the Bioinformatics and Computational Biology, 2009

2008

A new quartet approach for reconstructing phylogenetic trees: quartet joining method.

[BibT_eX]

[DOI]

Lei Xin

J. Comb. Optim., 2008

Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2008

Space Efficient Algorithms for Ordered Tree Comparison.

[BibT_eX]

[DOI]

Algorithmica, 2008

2007

Deploying Wireless Sensor Networks under Limited Mobility Constraints.

[BibT_eX]

[DOI]

IEEE Trans. Mob. Comput., 2007

Locality and Gaps in RNA Comparison.

[BibT_eX]

[DOI]

J. Comput. Biol., 2007

An Improved Algorithm for Tree Edit Distance Incorporating Structural Linearity.

[BibT_eX]

[DOI]

Proceedings of the Computing and Combinatorics, 13th Annual International Conference, 2007

The Normalized Similarity Metric and Its Applications.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry.

[BibT_eX]

[DOI]

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006

Algorithmic approaches for genome rearrangement: a review.

[BibT_eX]

[DOI]

Zimao Li

IEEE Trans. Syst. Man Cybern. Syst., 2006

RNA-RNA Interaction Prediction and Antisense RNA Target Search.

[BibT_eX]

[DOI]

Can Alkan

Emre Karakoç

Joseph H. Nadeau

Süleyman Cenk Sahinalp

J. Comput. Biol., 2006

Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures.

[BibT_eX]

[DOI]

Lieyu Wu

J. Bioinform. Comput. Biol., 2006

RNA Secondary Structure Prediction Via Energy Density Minimization.

[BibT_eX]

[DOI]

Can Alkan

Emre Karakoç

Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2006

RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research.

[BibT_eX]

[DOI]

Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005

MetricMap: an embedding technique for processing distance-based queries in metric spaces.

[BibT_eX]

[DOI]

IEEE Trans. Syst. Man Cybern. Part B, 2005

An effective algorithm for peptide de novo sequencing from MS/MS spectra.

[BibT_eX]

[DOI]

Chengzhi Liang

J. Comput. Syst. Sci., 2005

Multiple Rna Structure Alignment.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2005

Spider: Software for Protein Identification from Sequence Tags with <i>de Novo</i> Sequencing Error.

[BibT_eX]

[DOI]

Yonghua Han

J. Bioinform. Comput. Biol., 2005

An automata approach to match gapped sequence tags against protein database.

[BibT_eX]

[DOI]

Yonghua Han

Int. J. Found. Comput. Sci., 2005

Applying a wavelet method and linda for extracting detailed cartographic features from high resolution images.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

On the Longest Common Rigid Subsequence Problem.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 16th Annual Symposium, 2005

RNA Structure Comparison and Alignment.

[BibT_eX]

Proceedings of the Data Mining in Bioinformatics, 2005

2004

The longest common subsequence problem for arc-annotated sequences.

[BibT_eX]

[DOI]

J. Discrete Algorithms, 2004

Word Complexity And Repetitions In Words.

[BibT_eX]

[DOI]

Lucian Ilie

Sheng Yu

Int. J. Found. Comput. Sci., 2004

Finding Conserved Well-Ordered RNA Structures In Genomic Sequences.

[BibT_eX]

[DOI]

Shu-Yun Le

Jacob V. Maizel Jr.

Int. J. Comput. Intell. Appl., 2004

An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes.

[BibT_eX]

[DOI]

Shu-Yun Le

Jacob V. Maizel Jr.

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error.

[BibT_eX]

[DOI]

Yonghua Han

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003

An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum.

[BibT_eX]

[DOI]

Chengzhi Liang

Proceedings of the Combinatorial Pattern Matching, 14th Annual Symposium, 2003

Alignment between Two Multiple Alignments.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 14th Annual Symposium, 2003

2002

Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining.

[BibT_eX]

[DOI]

IEEE Trans. Knowl. Data Eng., 2002

Computing similarity between RNA structures.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2002

Finding approximate patterns in undirected acyclic graphs.

[BibT_eX]

[DOI]

George Jyh-Shian Chang

Pattern Recognit., 2002

A General Edit Distance between RNA Structures.

[BibT_eX]

[DOI]

J. Comput. Biol., 2002

ATreeGrep: Approximate Searching in Unordered Trees.

[BibT_eX]

[DOI]

Proceedings of the 14th International Conference on Scientific and Statistical Database Management, 2002

A wavelet transform based method for road extraction from high-resolution remotely sensed data.

[BibT_eX]

[DOI]

Tieling Chen

Proceedings of the IEEE International Geoscience and Remote Sensing Symposium, 2002

Repetition Complexity of Words.

[BibT_eX]

Lucian Ilie

Sheng Yu

Proceedings of the Fourth International Workshop on Descriptional Complexity of Formal Systems - DCFS 2002, London, Canada, August 21, 2002

2001

Finding similar consensus between trees: an algorithm and a distance hierarchy.

[BibT_eX]

[DOI]

Pattern Recognit., 2001

Perfect Phylogenetic Networks with Recombination.

[BibT_eX]

[DOI]

Louxin Zhang

J. Comput. Biol., 2001

A new algorithm for computing similarity between RNA structures.

[BibT_eX]

[DOI]

Gregory D. Collins

Shu-Yun Le

Inf. Sci., 2001

Edit distance between two RNA structures.

[BibT_eX]

[DOI]

Guohui Lin

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

Alignment between Two RNA Structures.

[BibT_eX]

[DOI]

Proceedings of the Mathematical Foundations of Computer Science 2001, 2001

2000

An Index Structure for Data Mining and Clustering.

[BibT_eX]

[DOI]

Knowl. Inf. Syst., 2000

Identifying consensus of trees through alignment.

[BibT_eX]

[DOI]

Inf. Sci., 2000

An Approximate Search Engine for Structural Databases.

[BibT_eX]

[DOI]

Proceedings of the 2000 ACM SIGMOD International Conference on Management of Data, 2000

1999

Identifying Approximately Common Substructures in Trees Based on a Restricted Edit Distance.

[BibT_eX]

[DOI]

Chia-Yo Chang

Inf. Sci., 1999

Evaluating a Class of Distance-Mapping Algorithms for Data Mining and Clustering.

[BibT_eX]

[DOI]

Proceedings of the Fifth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 1999

Finding Common RNA Secondary Structures from RNA Sequences.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 10th Annual Symposium, 1999

1998

An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees.

[BibT_eX]

[DOI]

IEEE Trans. Pattern Anal. Mach. Intell., 1998

Efficient Parallel Algorithm for the Editing Distance between Ordered Trees.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998

An Approximate Oracle for Distance in Metric Spaces.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998

1997

Structural Matching and Discovery in Document Databases.

[BibT_eX]

[DOI]

George Jyh-Shian Chang

Liam Relihan

Girish Patel

Proceedings of the SIGMOD 1997, 1997

Automated Discovery of Active Motifs in Three Dimensional Molecules.

[BibT_eX]

[DOI]

Proceedings of the Third International Conference on Knowledge Discovery and Data Mining (KDD-97), 1997

Tree pattern matching.

[BibT_eX]

Proceedings of the Pattern Matching Algorithms, 1997

1996

On the Editing Distance Between Undirected Acyclic Graphs.

[BibT_eX]

[DOI]

Int. J. Found. Comput. Sci., 1996

On the Complexity of Comparing Evolutionary Trees.

[BibT_eX]

[DOI]

Discret. Appl. Math., 1996

A Constrained Edit Distance Between Unordered Labeled Trees.

[BibT_eX]

[DOI]

Algorithmica, 1996

Fast Algorithms for Minimum Matrix Norm with Application in Computer Graphics.

[BibT_eX]

[DOI]

Shouwen Tang

Algorithmica, 1996

Linear Cartographic Data Acquisition from Scanned Topographic Maps.

[BibT_eX]

[DOI]

Ann. GIS, 1996

Automated Discovery of Active Motifs in Multiple RNA Secondary Structures.

[BibT_eX]

[DOI]

Proceedings of the Second International Conference on Knowledge Discovery and Data Mining (KDD-96), 1996

Efficient Parallel Algorithms for Tree Editing Problems.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 7th Annual Symposium, 1996

1995

Spectral and spatial decorrelation of Landsat-TM data for lossless compression.

[BibT_eX]

[DOI]

Shouwen Tang

IEEE Trans. Geosci. Remote. Sens., 1995

Alignment of Trees - An Alternative to Tree Edit.

[BibT_eX]

[DOI]

Tao Jiang

Theor. Comput. Sci., 1995

Algorithms for the constrained editing distance between ordered labeled trees and related problems.

[BibT_eX]

[DOI]

Pattern Recognit., 1995

Algorithms for Approximate Graph Matching.

[BibT_eX]

[DOI]

Gung-Wei Chirn

Inf. Sci., 1995

Pattern Matching and Pattern Discovery in Scientific, Program, and Document Databases.

[BibT_eX]

[DOI]

Proceedings of the 1995 ACM SIGMOD International Conference on Management of Data, 1995

On the Editing Distance between Undirected Acyclic Graphs and Related Problems.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 6th Annual Symposium, 1995

On the Complexity of Comparing Evolutionary Trees (Extended Abstract).

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 6th Annual Symposium, 1995

1994

Exact and approximate algorithms for unordered tree matching.

[BibT_eX]

[DOI]

IEEE Trans. Syst. Man Cybern., 1994

A System for Approximate Tree Matching.

[BibT_eX]

[DOI]

IEEE Trans. Knowl. Data Eng., 1994

Approximate Tree Matching in the Presence of Variable Length Don't Cares.

[BibT_eX]

[DOI]

J. Algorithms, 1994

Some MAX SNP-Hard Results Concerning Unordered Labeled Trees.

[BibT_eX]

[DOI]

Tao Jiang

Inf. Process. Lett., 1994

Combinatorial Pattern Discovery for Scientific Data: Some Preliminary Results.

[BibT_eX]

[DOI]

Proceedings of the 1994 ACM SIGMOD International Conference on Management of Data, 1994

Approximate Graph Matching Using Probabilistic Hill Climbing Algorithms.

[BibT_eX]

[DOI]

Gung-Wei Chirn

Proceedings of the Sixth International Conference on Tools with Artificial Intelligence, 1994

The approximate graph matching problem.

[BibT_eX]

[DOI]

Jason T. L. Wang

Gung-Wei Chirn

Proceedings of the 12th IAPR International Conference on Pattern Recognition, 1994

A Subjective Distortion Measure for Vector Quantization.

[BibT_eX]

[DOI]

Proceedings of the IEEE Data Compression Conference, 1994

Matching with Matrix Norm Minimization.

[BibT_eX]

[DOI]

Shouwen Tang

Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994

1993

Quantizer monotonicities and globally optimal scalar quantizer design.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Theory, 1993

A New Editing based Distance between Unordered Labeled Trees.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993

1992

On the Editing Distance Between Unordered Labeled Trees.

[BibT_eX]

[DOI]

Richard Statman

Inf. Process. Lett., 1992

Characterizing Regular Languages with Polynomial Densities.

[BibT_eX]

[DOI]

Proceedings of the Mathematical Foundations of Computer Science 1992, 1992

Pattern Matching in Unordered Trees.

[BibT_eX]

[DOI]

Frank Yeong-Chyang Shih

Proceedings of the Fourth International Conference on Tools with Artificial Intelligence, 1992

Fast Serial and Parallel Algorithms for Approximate Tree Matching with VLDC's.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, Third Annual Symposium, 1992

1991

A tool for tree pattern matching.

[BibT_eX]

[DOI]

Proceedings of the Third International Conference on Tools for Artificial Intelligence, 1991

A Better Tree-Structured Vector Quantizer.

[BibT_eX]

[DOI]

Proceedings of the IEEE Data Compression Conference, 1991

1990

Fast Algorithms for the Unit Cost Editing Distance Between Trees.

[BibT_eX]

[DOI]

J. Algorithms, 1990

Comparing multiple RNA secondary structures using tree comparisons.

[BibT_eX]

[DOI]

Bruce A. Shapiro

Comput. Appl. Biosci., 1990

1989

The editing distance between trees: Algorithms and applications.

[BibT_eX]

PhD thesis, 1989

Simple Fast Algorithms for the Editing Distance Between Trees and Related Problems.

[BibT_eX]

[DOI]

SIAM J. Comput., 1989

Fast Parallel Algorithms for the Unit Cost Editing Distance Between Trees.

[BibT_eX]

[DOI]