Kaizhong Zhang

According to our database1, Kaizhong Zhang authored at least 119 papers between 1989 and 2018.

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Bibliography

2018
An approach for N-linked glycan identification from MS/MS spectra by target-decoy strategy.
Computational Biology and Chemistry, 2018

2017
An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

NBPMF: Novel Peptide Mass Fingerprinting Based on Network Inference.
IJCINI, 2017

DISC: DISulfide linkage Characterization from tandem mass spectra.
Bioinformatics, 2017

NBPMF: Novel network-based inference methods for peptide mass fingerprinting.
Proceedings of the 16th IEEE International Conference on Cognitive Informatics & Cognitive Computing, 2017

2016
Spectra library assisted de novo peptide sequencing for HCD and ETD spectra pairs.
BMC Bioinformatics, 2016

Similarity metric induced metrics with application in machine learning and bioinformatics.
Proceedings of the 15th IEEE International Conference on Cognitive Informatics & Cognitive Computing , 2016

2015
A Novel Algorithm for Glycan de novo Sequencing Using Tandem Mass Spectrometry.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

An Approach for Matching Mixture MS/MS Spectra with a Pair of Peptide Sequences in a Protein Database.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

2014
Optimizing Spaced $k$-mer Neighbors for Efficient Filtration in Protein Similarity Search.
IEEE/ACM Trans. Comput. Biology Bioinform., 2014

Algorithms for local similarity between forests.
J. Comb. Optim., 2014

An improved algorithm for tree edit distance with applications for RNA secondary structure comparison.
J. Comb. Optim., 2014

Pattern Matching and Local Alignment for RNA Structures.
CoRR, 2014

An Effective Algorithm for Peptide de novo Sequencing from Mixture MS/MS Spectra.
Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

2012
A Method for Discovering Common Patterns from Two RNA Secondary Structures and its Application to Structural Repeat Detection.
J. Bioinformatics and Computational Biology, 2012

Algorithms for Forest Local Similarity.
Proceedings of the Combinatorial Optimization and Applications, 2012

Efficient filtration for similarity search with spaced k-mer neighbors.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2010
Ancient Chinese zither (guqin) music recovery with support vector machine.
JOCCH, 2010

On Comparing Two Structured RNA Multiple alignments.
J. Bioinformatics and Computational Biology, 2010

On the Longest Common Rigid Subsequence Problem.
Algorithmica, 2010

Algorithms for Forest Pattern Matching.
Proceedings of the Combinatorial Pattern Matching, 21st Annual Symposium, 2010

2009
On the similarity metric and the distance metric.
Theor. Comput. Sci., 2009

Edge Extraction with Gradient Directions.
Proceedings of the 2009 International Conference on Image Processing, 2009

Amino Acid Classification and Hash Seeds for Homology Search.
Proceedings of the Bioinformatics and Computational Biology, 2009

2008
A new quartet approach for reconstructing phylogenetic trees: quartet joining method.
J. Comb. Optim., 2008

Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry.
J. Bioinformatics and Computational Biology, 2008

Space Efficient Algorithms for Ordered Tree Comparison.
Algorithmica, 2008

2007
Deploying Wireless Sensor Networks under Limited Mobility Constraints.
IEEE Trans. Mob. Comput., 2007

Locality and Gaps in RNA Comparison.
Journal of Computational Biology, 2007

A New Quartet Approach for Reconstructing Phylogenetic Trees: Quartet Joining Method.
Proceedings of the Computing and Combinatorics, 13th Annual International Conference, 2007

An Improved Algorithm for Tree Edit Distance Incorporating Structural Linearity.
Proceedings of the Computing and Combinatorics, 13th Annual International Conference, 2007

The Normalized Similarity Metric and Its Applications.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry.
Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006
RNA-RNA Interaction Prediction and Antisense RNA Target Search.
Journal of Computational Biology, 2006

Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures.
J. Bioinformatics and Computational Biology, 2006

RNA Secondary Structure Prediction Via Energy Density Minimization.
Proceedings of the Research in Computational Molecular Biology, 2006

RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005
MetricMap: an embedding technique for processing distance-based queries in metric spaces.
IEEE Trans. Systems, Man, and Cybernetics, Part B, 2005

An effective algorithm for peptide de novo sequencing from MS/MS spectra.
J. Comput. Syst. Sci., 2005

Multiple Rna Structure Alignment.
J. Bioinformatics and Computational Biology, 2005

Spider: Software for Protein Identification from Sequence Tags with de Novo Sequencing Error.
J. Bioinformatics and Computational Biology, 2005

An automata approach to match gapped sequence tags against protein database.
Int. J. Found. Comput. Sci., 2005

RNA-RNA Interaction Prediction and Antisense RNA Target Search.
Proceedings of the Research in Computational Molecular Biology, 2005

Space Efficient Algorithms for Ordered Tree Comparison.
Proceedings of the Algorithms and Computation, 16th International Symposium, 2005

Applying a wavelet method and linda for extracting detailed cartographic features from high resolution images.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2005

Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures.
Proceedings of the Computational Science, 2005

On the Longest Common Rigid Subsequence Problem.
Proceedings of the Combinatorial Pattern Matching, 16th Annual Symposium, 2005

RNA Structure Comparison and Alignment.
Proceedings of the Data Mining in Bioinformatics, 2005

2004
The longest common subsequence problem for arc-annotated sequences.
J. Discrete Algorithms, 2004

Word Complexity And Repetitions In Words.
Int. J. Found. Comput. Sci., 2004

Finding Conserved Well-Ordered RNA Structures In Genomic Sequences.
International Journal of Computational Intelligence and Applications, 2004

An Automata Approach to Match Gapped Sequence Tags Against Protein Database.
Proceedings of the Implementation and Application of Automata, 2004

Multiple RNA Structure Alignment.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum.
Proceedings of the Combinatorial Pattern Matching, 14th Annual Symposium, 2003

Alignment between Two Multiple Alignments.
Proceedings of the Combinatorial Pattern Matching, 14th Annual Symposium, 2003

2002
Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining.
IEEE Trans. Knowl. Data Eng., 2002

Computing similarity between RNA structures.
Theor. Comput. Sci., 2002

Finding approximate patterns in undirected acyclic graphs.
Pattern Recognition, 2002

A General Edit Distance between RNA Structures.
Journal of Computational Biology, 2002

ATreeGrep: Approximate Searching in Unordered Trees.
Proceedings of the 14th International Conference on Scientific and Statistical Database Management, 2002

Repetition Complexity of Words.
Proceedings of the Fourth International Workshop on Descriptional Complexity of Formal Systems - DCFS 2002, London, Canada, August 21, 2002

Repetition Complexity of Words.
Proceedings of the Computing and Combinatorics, 8th Annual International Conference, 2002

2001
Finding similar consensus between trees: an algorithm and a distance hierarchy.
Pattern Recognition, 2001

Perfect Phylogenetic Networks with Recombination.
Journal of Computational Biology, 2001

A new algorithm for computing similarity between RNA structures.
Inf. Sci., 2001

Perfect phylogenetic networks with recombination.
Proceedings of the 2001 ACM Symposium on Applied Computing (SAC), 2001

Edit distance between two RNA structures.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

Alignment between Two RNA Structures.
Proceedings of the Mathematical Foundations of Computer Science 2001, 2001

2000
An Index Structure for Data Mining and Clustering.
Knowl. Inf. Syst., 2000

Identifying consensus of trees through alignment.
Inf. Sci., 2000

An Approximate Search Engine for Structural Databases.
Proceedings of the 2000 ACM SIGMOD International Conference on Management of Data, 2000

The Longest Common Subsequence Problem for Arc-Annotated Sequences.
Proceedings of the Combinatorial Pattern Matching, 11th Annual Symposium, 2000

1999
Identifying Approximately Common Substructures in Trees Based on a Restricted Edit Distance.
Inf. Sci., 1999

Evaluating a Class of Distance-Mapping Algorithms for Data Mining and Clustering.
Proceedings of the Fifth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 1999

Computing Similarity between RNA Structures.
Proceedings of the Combinatorial Pattern Matching, 10th Annual Symposium, 1999

Finding Common RNA Secondary Structures from RNA Sequences.
Proceedings of the Combinatorial Pattern Matching, 10th Annual Symposium, 1999

1998
An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees.
IEEE Trans. Pattern Anal. Mach. Intell., 1998

Efficient Parallel Algorithm for the Editing Distance between Ordered Trees.
Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998

An Approximate Oracle for Distance in Metric Spaces.
Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998

1997
Structural Matching and Discovery in Document Databases.
Proceedings of the SIGMOD 1997, 1997

Automated Discovery of Active Motifs in Three Dimensional Molecules.
Proceedings of the Third International Conference on Knowledge Discovery and Data Mining (KDD-97), 1997

Tree pattern matching.
Proceedings of the Pattern Matching Algorithms, 1997

1996
On the Editing Distance Between Undirected Acyclic Graphs.
Int. J. Found. Comput. Sci., 1996

On the Complexity of Comparing Evolutionary Trees.
Discrete Applied Mathematics, 1996

A Constrained Edit Distance Between Unordered Labeled Trees.
Algorithmica, 1996

Fast Algorithms for Minimum Matrix Norm with Application in Computer Graphics.
Algorithmica, 1996

Linear Cartographic Data Acquisition from Scanned Topographic Maps.
Annals of GIS, 1996

Automated Discovery of Active Motifs in Multiple RNA Secondary Structures.
Proceedings of the Second International Conference on Knowledge Discovery and Data Mining (KDD-96), 1996

Efficient Parallel Algorithms for Tree Editing Problems.
Proceedings of the Combinatorial Pattern Matching, 7th Annual Symposium, 1996

1995
Alignment of Trees - An Alternative to Tree Edit.
Theor. Comput. Sci., 1995

Algorithms for the constrained editing distance between ordered labeled trees and related problems.
Pattern Recognition, 1995

Algorithms for Approximate Graph Matching.
Inf. Sci., 1995

Pattern Matching and Pattern Discovery in Scientific, Program, and Document Databases.
Proceedings of the 1995 ACM SIGMOD International Conference on Management of Data, 1995

On the Editing Distance between Undirected Acyclic Graphs and Related Problems.
CPM, 1995

On the Complexity of Comparing Evolutionary Trees (Extended Abstract).
CPM, 1995

1994
Exact and approximate algorithms for unordered tree matching.
IEEE Trans. Systems, Man, and Cybernetics, 1994

A System for Approximate Tree Matching.
IEEE Trans. Knowl. Data Eng., 1994

Approximate Tree Matching in the Presence of Variable Length Don't Cares.
J. Algorithms, 1994

Some MAX SNP-Hard Results Concerning Unordered Labeled Trees.
Inf. Process. Lett., 1994

Combinatorial Pattern Discovery for Scientific Data: Some Preliminary Results.
Proceedings of the 1994 ACM SIGMOD International Conference on Management of Data, 1994

Approximate Graph Matching Using Probabilistic Hill Climbing Algorithms.
Proceedings of the Sixth International Conference on Tools with Artificial Intelligence, 1994

The approximate graph matching problem.
Proceedings of the 12th IAPR International Conference on Pattern Recognition, 1994

A Subjective Distortion Measure for Vector Quantization.
Proceedings of the IEEE Data Compression Conference, 1994

Matching with Matrix Norm Minimization.
Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994

Alignment of Trees - An Alternative to Tree Edit.
Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994

1993
Quantizer monotonicities and globally optimal scalar quantizer design.
IEEE Trans. Information Theory, 1993

A New Editing based Distance between Unordered Labeled Trees.
Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993

1992
On the Editing Distance Between Unordered Labeled Trees.
Inf. Process. Lett., 1992

Characterizing Regular Languages with Polynomial Densities.
Proceedings of the Mathematical Foundations of Computer Science 1992, 1992

Pattern Matching in Unordered Trees.
Proceedings of the Fourth International Conference on Tools with Artificial Intelligence, 1992

Fast Serial and Parallel Algorithms for Approximate Tree Matching with VLDC's.
Proceedings of the Combinatorial Pattern Matching, Third Annual Symposium, 1992

1991
A tool for tree pattern matching.
Proceedings of the Third International Conference on Tools for Artificial Intelligence, 1991

A Better Tree-Structured Vector Quantizer.
Proceedings of the IEEE Data Compression Conference, 1991

1990
Fast Algorithms for the Unit Cost Editing Distance Between Trees.
J. Algorithms, 1990

Comparing multiple RNA secondary structures using tree comparisons.
Computer Applications in the Biosciences, 1990

1989
Simple Fast Algorithms for the Editing Distance Between Trees and Related Problems.
SIAM J. Comput., 1989

Fast Parallel Algorithms for the Unit Cost Editing Distance Between Trees.
SPAA, 1989


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