Benjamin Audit

Orcid: 0000-0003-2683-9990

According to our database1, Benjamin Audit authored at least 20 papers between 2002 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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Online presence:

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Bibliography

2024
Space-Scale Hybrid Continuous-Discrete Sliding Frank-Wolfe Method.
IEEE Signal Process. Lett., 2024

A Comparative Analysis of Gene Expression Profiling by Statistical and Machine Learning Approaches.
CoRR, 2024

2023
Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths.
PLoS Comput. Biol., 2023

Studying Limits of Explainability by Integrated Gradients for Gene Expression Models.
CoRR, 2023

2017
Multi-scale structural community organisation of the human genome.
BMC Bioinform., 2017

2015
Embryonic Stem Cell Specific "Master" Replication Origins at the Heart of the Loss of Pluripotency.
PLoS Comput. Biol., 2015

2014
Large replication skew domains delimit GC-poor gene deserts in human.
Comput. Biol. Chem., 2014

2013
Human Genome Replication Proceeds through Four Chromatin States.
PLoS Comput. Biol., 2013

Relating mammalian replication program to large-scale chromatin folding.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines.
PLoS Comput. Biol., 2012

2011
Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome.
PLoS Comput. Biol., 2011

2009
Fractals and Wavelets: What Can We Learn on Transcription and Replication from Wavelet-Based Multifractal Analysis of DNA Sequences.
Proceedings of the Encyclopedia of Complexity and Systems Science, 2009

2008
Wavelet-based multifractal analysis.
Scholarpedia, 2008

2007
CORRIE: enzyme sequence annotation with confidence estimates.
BMC Bioinform., 2007

2006
Large-scale analysis of the human genome: From DNA sequence analysis to the modeling of replication in higher eukaryotes.
Proceedings of the 14th European Signal Processing Conference, 2006

2005
Probabilistic annotation of protein sequences based on functional classifications.
BMC Bioinform., 2005

CoGenT++: an extensive and extensible data environment for computational genomics.
Bioinform., 2005

2003
COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics.
Bioinform., 2003

2002
Wavelet-based estimators of scaling behavior.
IEEE Trans. Inf. Theory, 2002

Modeling the percolation of annotation errors in a database of protein sequences.
Bioinform., 2002


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