Sophia Tsoka

According to our database1, Sophia Tsoka authored at least 22 papers between 2000 and 2019.

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Bibliography

2019
Network-based piecewise linear regression for QSAR modelling.
Journal of Computer-Aided Molecular Design, 2019

2018
Reactome Pengine: a web-logic API to the Homo sapiens reactome.
Bioinformatics, 2018

2017
A regression tree approach using mathematical programming.
Expert Syst. Appl., 2017

2016
Mathematical programming for piecewise linear regression analysis.
Expert Syst. Appl., 2016

Organizational principles of the Reactome human BioPAX model using graph theory methods.
J. Complex Networks, 2016

Community Structure Detection for Directed Networks through Modularity Optimisation.
Algorithms, 2016

2015
Link Prediction Methods and Their Accuracy for Different Social Networks and Network Metrics.
Scientific Programming, 2015

Sample re-weighting hyper box classifier for multi-class data classification.
Computers & Industrial Engineering, 2015

CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks.
BMC Systems Biology, 2015

Using ILP to Identify Pathway Activation Patterns in Systems Biology.
Proceedings of the Inductive Logic Programming - 25th International Conference, 2015

2014
Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework.
BMC Bioinformatics, 2014

2012
Detection of Disjoint and Overlapping Modules in Weighted Complex Networks.
Advances in Complex Systems, 2012

Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum.
Proceedings of the Computational Methods in Systems Biology, 2012

2010
A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin.
PLoS Computational Biology, 2010

Promoter Complexity and Tissue-Specific Expression of Stress Response Components in Mytilus galloprovincialis, a Sessile Marine Invertebrate Species.
PLoS Computational Biology, 2010

Module detection in complex networks using integer optimisation.
Algorithms for Molecular Biology, 2010

2009
Stratification of co-evolving genomic groups using ranked phylogenetic profiles.
BMC Bioinformatics, 2009

2007
Computational methodologies for genome evolution and functional association.
Computers & Chemical Engineering, 2007

2005
CoGenT++: an extensive and extensible data environment for computational genomics.
Bioinformatics, 2005

2003
Evaluation of annotation strategies using an entire genome sequence.
Bioinformatics, 2003

2002
Modeling the percolation of annotation errors in a database of protein sequences.
Bioinformatics, 2002

2000
CAST: an iterative algorithm for the complexity analysis of sequence tracts.
Bioinformatics, 2000


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