Bonnie Kirkpatrick

According to our database, Bonnie Kirkpatrick authored at least 21 papers between 2003 and 2017.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2017

Design of nucleic acid strands with long low-barrier folding pathways.

Anne Condon, Bonnie Kirkpatrick, Ján Manuch

Nat. Comput., 2017

2016

Fast Computation of the Kinship Coefficients.

Bonnie Kirkpatrick

CoRR, 2016

Haplotype Inference for Pedigrees with Few Recombinations.

Bonnie Kirkpatrick

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2014

Perfect Phylogeny Problems with Missing Values.

Bonnie Kirkpatrick, Kristian Stevens

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

Reachability bounds for chemical reaction networks and strand displacement systems.

Anne Condon, Bonnie Kirkpatrick, Ján Manuch

Nat. Comput., 2014

Efficient Continuous-Time Markov Chain Estimation.

Monir Hajiaghayi, Bonnie Kirkpatrick, Liangliang Wang, Alexandre Bouchard-Côté

Proceedings of the 31th International Conference on Machine Learning, 2014

2012

Comparing Pedigree Graphs.

Bonnie Kirkpatrick, Yakir Reshef, Hilary K. Finucane, Haitao Jiang, Binhai Zhu, Richard M. Karp

J. Comput. Biol., 2012

Optimal State-Space Reduction for Pedigree Hidden Markov Models

Bonnie Kirkpatrick, Kay Kirkpatrick

CoRR, 2012

Bayesian Pedigree Analysis using Measure Factorization.

Bonnie Kirkpatrick, Alexandre Bouchard-Côté

Proceedings of the Advances in Neural Information Processing Systems 25: 26th Annual Conference on Neural Information Processing Systems 2012. Proceedings of a meeting held December 3-6, 2012

Non-identifiable Pedigrees and a Bayesian Solution.

Bonnie Kirkpatrick

Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012

2011

Algorithms for Human Genetics.

Bonnie Kirkpatrick

PhD thesis, 2011

Pedigree Reconstruction Using Identity by Descent.

Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin

J. Comput. Biol., 2011

Haplotypes versus genotypes on pedigrees.

Bonnie Kirkpatrick

Algorithms Mol. Biol., 2011

Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State Data with Missing Values.

Kristian Stevens, Bonnie Kirkpatrick

Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

2010

Haplotype Inference in Complex Pedigrees.

Bonnie Kirkpatrick, Eran Halperin, Richard M. Karp

J. Comput. Biol., 2010

Algorithms for Comparing Pedigree Graphs

Bonnie Kirkpatrick, Yakir Reshef, Hilary K. Finucane, Haitao Jiang, Binhai Zhu, Richard M. Karp

CoRR, 2010

2009

Haplotype Inference in Complex Pedigrees.

Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp

Proceedings of the Research in Computational Molecular Biology, 2009

2007

HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling.

Bonnie Kirkpatrick, Carlos Santos Armendariz, Richard M. Karp, Eran Halperin

Bioinform., 2007

2005

Using Motion Planning to Study RNA Folding Kinetics.

Xinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato

J. Comput. Biol., 2005

2003

A New Method for Mapping Discontinuous Antibody Epitopes to Reveal Structural Features of Proteins.

Brendan Mumey, Brian W. Bailey, Bonnie Kirkpatrick, Algirdas J. Jesaitis, Thomas Angel, Edward A. Dratz

J. Comput. Biol., 2003

Mapping Discontinuous Antibody Epitopes to Reveal Protein Structure and Changes in Structure Related to Function.

Brendan Mumey, Thomas Angel, Bonnie Kirkpatrick, Brian W. Bailey, P. Hargrave, Algirdas J. Jesaitis, Edward A. Dratz

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003