Brandon M. Malone

According to our database, Brandon M. Malone authored at least 29 papers between 2008 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

BERTMHC: improved MHC-peptide class II interaction prediction with transformer and multiple instance learning.

Jun Cheng, Kaïdre Bendjama, Karola Rittner, Brandon M. Malone

Bioinform., November, 2021

2019

Early Detection of Infection Chains & Outbreaks: Use Case Infection Control.

A. Sargeant, Tatiana von Landesberger, C. Baier, F. Bange, A. Dalpke, T. Eckmanns, Stephan Glöckner, M. Kaase, Gérard Krause, Michael Marschollek, Brandon M. Malone, Mathias Niepert, S. Rey, Antje Wulff, Simone Scheithauer

Proceedings of the ICT for Health Science Research - Proceedings of the EFMI 2019 Special Topic Conference, 2019

2018

Empirical hardness of finding optimal Bayesian network structures: algorithm selection and runtime prediction.

Brandon M. Malone, Kustaa Kangas, Matti Järvisalo, Mikko Koivisto, Petri Myllymäki

Mach. Learn., 2018

Learning Representations of Missing Data for Predicting Patient Outcomes.

Brandon M. Malone, Alberto García-Durán, Mathias Niepert

CoRR, 2018

Knowledge Graph Completion to Predict Polypharmacy Side Effects.

Brandon M. Malone, Alberto García-Durán, Mathias Niepert

Proceedings of the Data Integration in the Life Sciences - 13th International Conference, 2018

2017

Duplicate Detection for Bayesian Network Structure Learning.

Niklas Jahnsson, Brandon M. Malone, Petri Myllymäki

New Gener. Comput., 2017

AS-ASL: Algorithm Selection with Auto-sklearn.

Brandon M. Malone, Kustaa Kangas, Matti Järvisalo, Mikko Koivisto, Petri Myllymäki

Proceedings of the Open Algorithm Selection Challenge 2017, 2017

Advanced Methodologies for Bayesian Networks 2017: Preface.

Joe Suzuki, Antti Hyttinen, Brandon M. Malone

Proceedings of the 3rd Workshop on Advanced Methodologies for Bayesian Networks, 2017

2015

Impact of Learning Strategies on the Quality of Bayesian Networks: An Empirical Evaluation.

Brandon M. Malone, Matti Järvisalo, Petri Myllymäki

Proceedings of the Thirty-First Conference on Uncertainty in Artificial Intelligence, 2015

Hashing-Based Hybrid Duplicate Detection for Bayesian Network Structure Learning.

Niklas Jahnsson, Brandon M. Malone, Petri Myllymäki

Proceedings of the Advanced Methodologies for Bayesian Networks, 2015

MaxSAT-Based Cutting Planes for Learning Graphical Models.

Paul Saikko, Brandon M. Malone, Matti Järvisalo

Proceedings of the Integration of AI and OR Techniques in Constraint Programming, 2015

2014

Finding Optimal Bayesian Network Structures with Constraints Learned from Data.

Xiannian Fan, Brandon M. Malone, Changhe Yuan

Proceedings of the Thirtieth Conference on Uncertainty in Artificial Intelligence, 2014

Portfolio-Based Selection of Robust Dynamic Loop Scheduling Algorithms Using Machine Learning.

Nitin Sukhija, Brandon M. Malone, Srishti Srivastava, Ioana Banicescu, Florina M. Ciorba

Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Learning Optimal Bounded Treewidth Bayesian Networks via Maximum Satisfiability.

Jeremias Berg, Matti Järvisalo, Brandon M. Malone

Proceedings of the Seventeenth International Conference on Artificial Intelligence and Statistics, 2014

Predicting the Hardness of Learning Bayesian Networks.

Brandon M. Malone, Kustaa Kangas, Matti Järvisalo, Mikko Koivisto, Petri Myllymäki

Proceedings of the Twenty-Eighth AAAI Conference on Artificial Intelligence, 2014

Tightening Bounds for Bayesian Network Structure Learning.

Xiannian Fan, Changhe Yuan, Brandon M. Malone

Proceedings of the Twenty-Eighth AAAI Conference on Artificial Intelligence, 2014

2013

Learning Optimal Bayesian Networks: A Shortest Path Perspective.

Changhe Yuan, Brandon M. Malone

J. Artif. Intell. Res., 2013

Evaluating Anytime Algorithms for Learning Optimal Bayesian Networks.

Brandon M. Malone, Changhe Yuan

Proceedings of the Twenty-Ninth Conference on Uncertainty in Artificial Intelligence, 2013

Predicting the Flexibility of Dynamic Loop Scheduling Using an Artificial Neural Network.

Srishti Srivastava, Brandon M. Malone, Nitin Sukhija, Ioana Banicescu, Florina M. Ciorba

Proceedings of the IEEE 12th International Symposium on Parallel and Distributed Computing, 2013

A Depth-First Branch and Bound Algorithm for Learning Optimal Bayesian Networks.

Brandon M. Malone, Changhe Yuan

Proceedings of the Graph Structures for Knowledge Representation and Reasoning, 2013

2012

Empirical evaluation of scoring functions for Bayesian network model selection.

Zhifa Liu, Brandon M. Malone, Changhe Yuan

BMC Bioinform., 2012

An Improved Admissible Heuristic for Learning Optimal Bayesian Networks.

Changhe Yuan, Brandon M. Malone

Proceedings of the Twenty-Eighth Conference on Uncertainty in Artificial Intelligence, 2012

2011

The Proteogenomic Mapping Tool.

William S. Sanders, Nan Wang, Susan M. Bridges, Brandon M. Malone, Yoginder S. Dandass, Fiona M. McCarthy, Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess

BMC Bioinform., 2011

Improving the Scalability of Optimal Bayesian Network Learning with External-Memory Frontier Breadth-First Branch and Bound Search.

Brandon M. Malone, Changhe Yuan, Eric A. Hansen, Susan Bridges

Proceedings of the UAI 2011, 2011

Learning Optimal Bayesian Networks Using A* Search.

Changhe Yuan, Brandon M. Malone, XiaoJian Wu

Proceedings of the IJCAI 2011, 2011

Memory-Efficient Dynamic Programming for Learning Optimal Bayesian Networks.

Brandon M. Malone, Changhe Yuan, Eric A. Hansen

Proceedings of the Twenty-Fifth AAAI Conference on Artificial Intelligence, 2011

2009

Integrating phenotype and gene expression data for predicting gene function.

Brandon M. Malone, Andy D. Perkins, Susan M. Bridges

BMC Bioinform., 2009

2008

Tracking requirements and threats for secure software development.

Brandon M. Malone, Ambareen Siraj

Proceedings of the 46th Annual Southeast Regional Conference, 2008

Utilizing smart cards for authentication and compliance tracking in a diabetes case management system.

Michael K. Baldwin, Brandon M. Malone

Proceedings of the 46th Annual Southeast Regional Conference, 2008