Bryce K. Allen

According to our database, Bryce K. Allen authored at least 11 papers between 2017 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

alchemlyb: the simple alchemistry library.

David L. Dotson, Ian M. Kenney, Oliver Beckstein, Shuai Liu, Travis Jensen, Bryce K. Allen, Dominik Wille, Victoria T. Lim, Hyungro Lee, Mohammad Soroush Barhaghi, Zhiyi Wu, Wei-Tse Hsu, Alexander Schlaich, Jérôme Hénin, Thomas T. Joseph, Irfan Alibay, Pascal T. Merz, Domenico Marson, Shujie Fan, Jan Janssen, Haoxi Li, Helmut Carter, David L. Mobley, Michael R. Shirts, Jennifer A. Clark

Dataset, October, 2025

alchemlyb: the simple alchemistry library.

David L. Dotson, Ian M. Kenney, Oliver Beckstein, Shuai Liu, Travis Jensen, Bryce K. Allen, Dominik Wille, Victoria T. Lim, Hyungro Lee, Mohammad Soroush Barhaghi, Zhiyi Wu, Wei-Tse Hsu, Alexander Schlaich, Jérôme Hénin, Thomas T. Joseph, Irfan Alibay, Pascal T. Merz, Domenico Marson, Shujie Fan, Jan Janssen, Haoxi Li, Helmut Carter, David L. Mobley, Michael R. Shirts, Jennifer A. Clark

Dataset, October, 2025

2024

alchemlyb: the simple alchemistry library.

David L. Dotson, Ian M. Kenney, Oliver Beckstein, Shuai Liu, Travis Jensen, Bryce K. Allen, Dominik Wille, Victoria T. Lim, Hyungro Lee, Mohammad Soroush Barhaghi, Zhiyi Wu, Wei-Tse Hsu, Alexander Schlaich, Jérôme Hénin, Thomas T. Joseph, Irfan Alibay, Pascal T. Merz, Domenico Marson, Shujie Fan, Jan Janssen, Haoxi Li, Helmut Carter, David L. Mobley, Michael R. Shirts, Jennifer A. Clark

Dataset, September, 2024

alchemlyb: the simple alchemistry library.

David L. Dotson, Ian M. Kenney, Oliver Beckstein, Shuai Liu, Travis Jensen, Bryce K. Allen, Dominik Wille, Victoria T. Lim, Hyungro Lee, Mohammad Soroush Barhaghi, Zhiyi Wu, Wei-Tse Hsu, Alexander Schlaich, Jérôme Hénin, Thomas T. Joseph, Irfan Alibay, Pascal T. Merz, Domenico Marson, Shujie Fan, Jan Janssen, Haoxi Li, Helmut Carter, David L. Mobley, Michael R. Shirts, Jennifer A. Clark

Dataset, September, 2024

alchemlyb.

David L. Dotson, Ian M. Kenney, Oliver Beckstein, Shuai Liu, Travis Jensen, Bryce K. Allen, Dominik Wille, Victoria T. Lim, Hyungro Lee, Mohammad Soroush Barhaghi, Zhiyi Wu, Wei-Tse Hsu, Alexander Schlaich, Jérôme Hénin, Thomas T. Joseph, Irfan Alibay, Pascal T. Merz, Domenico Marson, Shujie Fan, Jan Janssen, Haoxi Li, Helmut Carter, David L. Mobley, Michael R. Shirts, Jennifer A. Clark

Dataset, September, 2024

alchemlyb: the simple alchemistry library.

Zhiyi Wu, David L. Dotson, Irfan Alibay, Bryce K. Allen, Mohammad Soroush Barhaghi, Jérôme Hénin, Thomas T. Joseph, Ian M. Kenney, Hyungro Lee, Haoxi Li, Victoria T. Lim, Shuai Liu, Domenico Marson, Pascal T. Merz, Alexander Schlaich, David L. Mobley, Michael R. Shirts, Oliver Beckstein

J. Open Source Softw., 2024

2023

Targeted Protein Degradation: Advances, Challenges, and Prospects for Computational Methods.

Barmak Mostofian, Holli-Joi Martin, Asghar Razavi, Shivam Patel, Bryce K. Allen, Woody Sherman, Jesus A. Izaguirre

J. Chem. Inf. Model., September, 2023

2020

Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery.

Tai-Sung Lee, Bryce K. Allen, Timothy J. Giese, Zhenyu Guo, Pengfei Li, Charles Lin, T. Dwight McGee Jr., David A. Pearlman, Brian K. Radak, Yujun Tao, Hsu-Chun Tsai, Huafeng Xu, Woody Sherman, Darrin M. York

J. Chem. Inf. Model., 2020

Rigorous Free Energy Simulations in Virtual Screening.

Zoe Cournia, Bryce K. Allen, Thijs Beuming, David A. Pearlman, Brian K. Radak, Woody Sherman

J. Chem. Inf. Model., 2020

2018

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.

Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung, Daniel J. Cooper, John Paul Turner, Dusica Vidovic, Michele Forlin, Tanya T. Kelley, Alessandro D'Urso, Bryce K. Allen, Denis Torre, Kathleen M. Jagodnik, Lily Wang, Sherry L. Jenkins, Christopher Mader, Wen Niu, Mehdi Fazel, Naim Al Mahi, Marcin Pilarczyk, Nicholas A. Clark, Behrouz Shamsaei, Jarek Meller, Juozas Vasiliauskas, John Reichard, Mario Medvedovic, Avi Ma'ayan, Ajay Pillai, Stephan C. Schürer

Nucleic Acids Res., 2018

2017

Relative Binding Free Energy Calculations in Drug Discovery: Recent Advances and Practical Considerations.

Zoe Cournia, Bryce K. Allen, Woody Sherman

J. Chem. Inf. Model., December, 2017