Kathleen M. Jagodnik

According to our database, Kathleen M. Jagodnik authored at least 18 papers between 2009 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

SigCom LINCS: data and metadata search engine for a million gene expression signatures.

John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic, Avi Ma'ayan

Nucleic Acids Res., 2022

Progress in and Opportunities for Applying Information Theory to Computational Biology and Bioinformatics.

Alon Bartal, Kathleen M. Jagodnik

Entropy, 2022

DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules.

Eryk Kropiwnicki, Alexander Lachmann, Daniel J. B. Clarke, Zhuorui Xie, Kathleen M. Jagodnik, Avi Ma'ayan

BMC Bioinform., 2022

2021

Appyters: Turning Jupyter Notebooks into data-driven web apps.

Daniel J. B. Clarke, Minji Jeon, Daniel J. Stein, Nicole Moiseyev, Eryk Kropiwnicki, Charles Dai, Zhuorui Xie, Megan L. Wojciechowicz, Skylar Litz, Jason Hom, John Erol Evangelista, Lucas Goldman, Serena Zhang, Christine Yoon, Tahmid Ahamed, Samantha Bhuiyan, Minxuan Cheng, Julie Karam, Kathleen M. Jagodnik, Ingrid Shu, Alexander Lachmann, Sam Ayling, Sherry L. Jenkins, Avi Ma'ayan

Patterns, 2021

Role-Aware Information Spread in Online Social Networks.

Alon Bartal, Kathleen M. Jagodnik

Entropy, 2021

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.

Eryk Kropiwnicki, John Erol Evangelista, Daniel J. Stein, Daniel J. B. Clarke, Alexander Lachmann, Maxim V. Kuleshov, Minji Jeon, Kathleen M. Jagodnik, Avi Ma'ayan

Database J. Biol. Databases Curation, 2021

2020

The COVID-19 Drug and Gene Set Library.

Maxim V. Kuleshov, Daniel J. Stein, Daniel J. B. Clarke, Eryk Kropiwnicki, Kathleen M. Jagodnik, Alon Bartal, John Erol Evangelista, Jason Hom, Minxuan Cheng, Allison Bailey, Abigail Zhou, Laura B. Ferguson, Alexander Lachmann, Avi Ma'ayan

Patterns, 2020

EnrichrBot: Twitter bot tracking tweets about human genes.

Alon Bartal, Alexander Lachmann, Daniel J. B. Clarke, Allison H. Seiden, Kathleen M. Jagodnik, Avi Ma'ayan

Bioinform., 2020

2019

ChEA3: transcription factor enrichment analysis by orthogonal omics integration.

Alexandra B. Keenan, Denis Torre, Alexander Lachmann, Ariel K. Leong, Megan L. Wojciechowicz, Vivian Utti, Kathleen M. Jagodnik, Eryk Kropiwnicki, Zichen Wang, Avi Ma'ayan

Nucleic Acids Res., 2019

Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures.

Zichen Wang, Edward He, Kevin Sani, Kathleen M. Jagodnik, Moshe C. Silverstein, Avi Ma'ayan

Bioinform., 2019

2018

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.

Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung, Daniel J. Cooper, John Paul Turner, Dusica Vidovic, Michele Forlin, Tanya T. Kelley, Alessandro D'Urso, Bryce K. Allen, Denis Torre, Kathleen M. Jagodnik, Lily Wang, Sherry L. Jenkins, Christopher Mader, Wen Niu, Mehdi Fazel, Naim Al Mahi, Marcin Pilarczyk, Nicholas A. Clark, Behrouz Shamsaei, Jarek Meller, Juozas Vasiliauskas, John Reichard, Mario Medvedovic, Avi Ma'ayan, Ajay Pillai, Stephan C. Schürer

Nucleic Acids Res., 2018

2017

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.

Kathleen M. Jagodnik, Simon Koplev, Sherry L. Jenkins, Lucila Ohno-Machado, Benedict Paten, Stephan C. Schürer, Michel Dumontier, Ruben Verborgh, Alex Bui, Peipei Ping, Neil J. McKenna, Ravi K. Madduri, Ajay Pillai, Avi Ma'ayan

J. Biomed. Informatics, 2017

The SmartAPI Ecosystem for Making Web APIs FAIR.

Shima Dastgheib, Trish Whetzel, Amrapali Zaveri, Cyrus Afrasiabi, Pedro Assis, Paul Avillach, Kathleen M. Jagodnik, Gabor Korodi, Marcin Pilarczyk, Jeff de Pons, Stephan C. Schürer, Raymond Terryn, Ruben Verborgh, Chunlei Wu, Michel Dumontier

Proceedings of the ISWC 2017 Posters & Demonstrations and Industry Tracks co-located with 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 23rd - to, 2017

smartAPI: Towards a More Intelligent Network of Web APIs.

Amrapali Zaveri, Shima Dastgheib, Chunlei Wu, Trish Whetzel, Ruben Verborgh, Paul Avillach, Gabor Korodi, Raymond Terryn, Kathleen M. Jagodnik, Pedro Assis, Michel Dumontier

Proceedings of the Semantic Web - 14th International Conference, 2017

2016

Human-Like Rewards to Train a Reinforcement Learning Controller for Planar Arm Movement.

Kathleen M. Jagodnik, Philip S. Thomas, Antonie J. van den Bogert, Michael S. Branicky, Robert F. Kirsch

IEEE Trans. Hum. Mach. Syst., 2016

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.

Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard, Nicolas F. Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L. Jenkins, Kathleen M. Jagodnik, Alexander Lachmann, Michael G. McDermott, Caroline D. Monteiro, Gregory W. Gundersen, Avi Ma'ayan

Nucleic Acids Res., 2016

GEN3VA: aggregation and analysis of gene expression signatures from related studies.

Gregory W. Gundersen, Kathleen M. Jagodnik, Holly Woodland, Nicolas F. Fernandez, Kevin Sani, Anders B. Dohlman, Peter Man-Un Ung, Caroline D. Monteiro, Avner Schlessinger, Avi Ma'ayan

BMC Bioinform., 2016

2009

Application of the Actor-Critic Architecture to Functional Electrical Stimulation Control of a Human Arm.

Philip S. Thomas, Antonie J. van den Bogert, Kathleen M. Jagodnik, Michael S. Branicky

Proceedings of the Twenty-First Conference on Innovative Applications of Artificial Intelligence, 2009