Chengyun Zhang

According to our database, Chengyun Zhang authored at least 19 papers between 2019 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

HighMPNN: A Graph Neural Network Approach for Structure-Constrained Cyclic Peptide Sequence Design.

Wen Xu, Chengyun Zhang, Tianfeng Shang, Qingyi Mao, Jingjing Guo, Hongliang Duan

IEEE J. Biomed. Health Informatics, May, 2026

High-PepBinder: A pLM-Guided Latent Diffusion Framework for Affinity-Aware Target-Specific Peptide Design.

Qingyi Mao, Silong Zhai, Sen Cao, Renjie Zhu, Wen Xu, Chengyun Zhang, Ning Zhu, Jingjing Guo, Hongliang Duan

J. Chem. Inf. Model., 2026

HighFold-MeD2: An Enhanced Boltz-2 Model for Accurate Structure Prediction of N-Methylated and d -Amino Acid Cyclic Peptides.

Zhigang Cao, Wentong Wang, Sen Cao, Chengyun Zhang, Jingjing Guo, Hongliang Duan

J. Chem. Inf. Model., 2026

HighRes_Builder: improved access and modeling of noncanonical residues for protein structure prediction.

Yanchao Han, Jianfeng Mei, Gaoshuai Li, Enkang Dai, Hanlei Lu, Chengyun Zhang, Yanlu Zhang, Chenshui Lin, Chuanlong Zeng, Hongliang Duan, Xudong Wang

Briefings Bioinform., 2026

2025

CycleDesigner: Leveraging CycRFdiffusion and HighFold to Design Cyclic Peptide Binders for Specific Targets.

Chenhao Zhang, Zhenyu Xu, Kang Lin, Ning Zhu, Chengyun Zhang, Wen Xu, Jingjing Guo, An Su, Chengxi Li, Hongliang Duan

J. Chem. Inf. Model., 2025

AlphaFold3 for Noncanonical Cyclic Peptide Modeling: Hierarchical Benchmarking Reveals Accuracy and Practical Guidelines.

Chengyun Zhang, Wentong Wang, Ning Zhu, Zhigang Cao, Yaling Wu, Qingyi Mao, Cheng Zhu, Chenhao Zhang, Jingjing Guo, Hongliang Duan

J. Chem. Inf. Model., 2025

Unlocking Agentic AI Service Deployment Complexity: Simulation-Guided Strategy Orchestration and Optimization.

Chongxi Ma, Chengyun Zhang, Long Luo, Weihong Wu, Hongfang Yu

Proceedings of the 31th IEEE International Conference on Parallel and Distributed Systems, 2025

Poster: Simulation-Guided Strategy Generation for Intent-Aware Distributed LLMs Training.

Chongxi Ma, Chengyun Zhang, Long Luo, Hongfang Yu

Proceedings of the 33rd IEEE International Conference on Network Protocols, 2025

2024

GAPS: a geometric attention-based network for peptide binding site identification by the transfer learning approach.

Cheng Zhu, Chengyun Zhang, Tianfeng Shang, Chenhao Zhang, Silong Zhai, Lujing Cao, Zhenyu Xu, Zhihao Su, Ying Song, An Su, Chengxi Li, Hongliang Duan

Briefings Bioinform., July, 2024

HighFold: accurately predicting structures of cyclic peptides and complexes with head-to-tail and disulfide bridge constraints.

Chenhao Zhang, Chengyun Zhang, Tianfeng Shang, Ning Zhu, Xinyi Wu, Hongliang Duan

Briefings Bioinform., May, 2024

Automatic bioacoustics noise reduction method based on a deep feature loss network.

Chengyun Zhang, Kaiying He, Xinghui Gao, Yingying Guo

Ecol. Informatics, 2024

2022

Self-Supervised Molecular Pretraining Strategy for Low-Resource Reaction Prediction Scenarios.

Zhipeng Wu, Xiang Cai, Chengyun Zhang, Haoran Qiao, Yejian Wu, Yun Zhang, Xinqiao Wang, Haiying Xie, Feng Luo, Hongliang Duan

J. Chem. Inf. Model., 2022

From theory to experiment: transformer-based generation enables rapid discovery of novel reactions.

Xinqiao Wang, Chuansheng Yao, Yun Zhang, Jiahui Yu, Haoran Qiao, Chengyun Zhang, Yejian Wu, Renren Bai, Hongliang Duan

J. Cheminformatics, 2022

A constrained cooperative adaptive multi-population differential evolutionary algorithm for economic load dispatch problems.

Liyun Fu, Haibin Ouyang, Chengyun Zhang, Steven Li, Ali Wagdy Mohamed

Appl. Soft Comput., 2022

Energy-based Nonstationary Acoustic Source Localization in Correlated Noise Environment.

Bo Xiao, Bingpeng Zhou, Qingchun Chen, Chengyun Zhang

Proceedings of the 7th International Conference on Computer and Communication Systems, 2022

2021

Design of Wireless Sensor Body Measurement Information Acquisition System for College Students' Physical Health Management.

Haishan Liu, Mingjiang Zhu, Yuanjing Li, Chengyun Zhang, Yejun Bie, Hui Zhang

J. Sensors, 2021

Hybrid Harmony Search Differential Evolution Algorithm.

Liyun Fu, Houyao Zhu, Chengyun Zhang, Haibin Ouyang, Steven Li

IEEE Access, 2021

2019

Retrosynthesis with Attention-Based NMT Model and Chemical Analysis of the "Wrong" Predictions.

Hongliang Duan, Ling Wang, Chengyun Zhang, Jianjun Li

CoRR, 2019

Big Data-Based Improved Data Acquisition and Storage System for Designing Industrial Data Platform.

Daoqu Geng, Chengyun Zhang, Chengjing Xia, Xue Xia, Qilin Liu, Xinshuai Fu

IEEE Access, 2019