D. Benjamin Gordon

According to our database, D. Benjamin Gordon authored at least 6 papers between 1998 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Prediction of whole-cell transcriptional response with machine learning.

Mohammed Eslami, Amin Espah Borujeni, Hamed Eramian, Mark Weston, George Zheng, Joshua Urrutia, Carolyn Corbet, Diveena Becker, Paul Maschhoff, Katie Clowers, Alexander Cristofaro, Hamid Doost Hosseini, D. Benjamin Gordon, Yuval Dorfan, Jedediah Singer, Matthew Vaughn, Niall Gaffney, John Fonner, Joe Stubbs, Christopher A. Voigt, Enoch Yeung

Bioinform., 2022

2006

An improved map of conserved regulatory sites for <i>Saccharomyces cerevisiae</i>.

Kenzie D. MacIsaac, Ting Wang, D. Benjamin Gordon, David K. Gifford, Gary D. Stormo, Ernest Fraenkel

BMC Bioinform., 2006

A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.

Kenzie D. MacIsaac, D. Benjamin Gordon, Lena Nekludova, Duncan T. Odom, Joerg Schreiber, David K. Gifford, Richard A. Young, Ernest Fraenkel

Bioinform., 2006

2005

TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs.

D. Benjamin Gordon, Lena Nekludova, Scott McCallum, Ernest Fraenkel

Bioinform., 2005

2003

Exact rotamer optimization for protein design.

D. Benjamin Gordon, Geoffrey K. Hom, Stephen L. Mayo, Niles A. Pierce

J. Comput. Chem., 2003

1998

Radical performance enhancements for combinatorial optimization algorithms based on the dead-end elimination theorem.

D. Benjamin Gordon, Stephen L. Mayo

J. Comput. Chem., 1998