Niles A. Pierce

According to our database, Niles A. Pierce authored at least 9 papers between 2000 and 2011.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2011

Nucleic acid sequence design via efficient ensemble defect optimization.

Joseph N. Zadeh, Brian R. Wolfe, Niles A. Pierce

J. Comput. Chem., 2011

NUPACK: Analysis and design of nucleic acid systems.

Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois, Brian R. Wolfe, Marshall B. Pierce, Asif R. Khan, Robert M. Dirks, Niles A. Pierce

J. Comput. Chem., 2011

2007

Thermodynamic Analysis of Interacting Nucleic Acid Strands.

Robert M. Dirks, Justin S. Bois, Joseph M. Schaeffer, Erik Winfree, Niles A. Pierce

SIAM Rev., 2007

2006

Nanoscale Molecular Transport by Synthetic DNA Machines.

Jong-Shik Shin, Niles A. Pierce

Proceedings of the Nanotechnology: Science and Computation, 2006

2004

An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots.

Robert M. Dirks, Niles A. Pierce

J. Comput. Chem., 2004

2003

Exact rotamer optimization for protein design.

D. Benjamin Gordon, Geoffrey K. Hom, Stephen L. Mayo, Niles A. Pierce

J. Comput. Chem., 2003

A partition function algorithm for nucleic acid secondary structure including pseudoknots.

Robert M. Dirks, Niles A. Pierce

J. Comput. Chem., 2003

2000

Adjoint Recovery of Superconvergent Functionals from PDE Approximations.

Niles A. Pierce, Michael B. Giles

SIAM Rev., 2000

Conformational splitting: A more powerful criterion for dead-end elimination.

Niles A. Pierce, Jan A. Spriet, J. Desmet, Stephen L. Mayo

J. Comput. Chem., 2000