Daniel Jost

According to our database, Daniel Jost authored at least 7 papers between 2013 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2022

3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion.

Todor Gitchev, Gabriel Zala, Peter Meister, Daniel Jost

Bioinform., December, 2022

Dynamical modeling of the H3K27 epigenetic landscape in mouse embryonic stem cells.

Kapil Newar, Amith Zafal Abdulla, Hossein Salari, Eric Fanchon, Daniel Jost

PLoS Comput. Biol., September, 2022

3DGenBench: a web-server to benchmark computational models for 3D Genomics.

Polina Belokopytova, Emil Viesná, Mateusz Chilinski, Yifeng Qi, Hossein Salari, Marco Di Stefano, Andrea Esposito, Mattia Conte, Andrea Maria Chiariello, Vladimir B. Teif, Dariusz Plewczynski, Bin Zhang, Daniel Jost, Veniamin Fishman

Nucleic Acids Res., 2022

2020

PenDA, a rank-based method for personalized differential analysis: Application to lung cancer.

Magali Richard, Clémentine Decamps, Florent Chuffart, Elisabeth Brambilla, Sophie Rousseaux, Saadi Khochbin, Daniel Jost

PLoS Comput. Biol., 2020

Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software.

Clémentine Decamps, Florian Privé, Raphael Bacher, Daniel Jost, Arthur Waguet, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik, Aleksandar Milosavljevic, Michael Scherer, Michael G. B. Blum, Magali Richard

BMC Bioinform., 2020

2018

How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes.

Surya K. Ghosh, Daniel Jost

PLoS Comput. Biol., 2018

2013

Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA.

Daniel Jost

Bioinform., 2013