Dariusz Plewczynski

According to our database, Dariusz Plewczynski authored at least 61 papers between 2004 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2020

Disentangling the complexity of low complexity proteins.

Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A. Ouzounis, Vasilis J. Promponas, Andrey V. Kajava, John M. Hancock, Silvio C. E. Tosatto, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro

Briefings Bioinform., 2020

2019

Chromatin: A Semi-Structured Polymer.

Wayne K. Dawson, Michal Lazniewski, Dariusz Plewczynski

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

3gClust: Human Protein Cluster Analysis.

Anup Kumar Halder, Piyali Chatterjee, Mita Nasipuri, Dariusz Plewczynski, Subhadip Basu

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

An empirical Bayes approach for learning directed acyclic graph using MCMC algorithm.

Vahid Rezaei Tabar, Hamid Zareifard, Selva Salimi, Dariusz Plewczynski

Stat. Anal. Data Min., 2019

Dendritic Spines Taxonomy: The Functional and Structural Classification • Time-Dependent Probabilistic Model of Neuronal Activation.

Paulina Urban, Vahid Rezaei, Grzegorz Bokota, Michal Denkiewicz, Subhadip Basu, Dariusz Plewczynski

J. Comput. Biol., 2019

Identification of Epigenetic Biomarkers with the use of Gene Expression and DNA Methylation for Breast Cancer Subtypes.

Indrajit Saha, Somnath Rakshit, Michal Wlasnowolski, Dariusz Plewczynski

Proceedings of the TENCON 2019, 2019

Survival Analysis with the Integration of RNA-Seq and Clinical Data to Identify Breast Cancer Subtype Specific Genes.

Indrajit Saha, Somnath Rakshit, Michal Denkiewicz, Jnanendra Prasad Sarkar, Debasree Maity, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of the Pattern Recognition and Machine Intelligence, 2019

Deep Learning for Detection and Localization of Thoracic Diseases Using Chest X-Ray Imagery.

Somnath Rakshit, Indrajit Saha, Michal Wlasnowolski, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of the Artificial Intelligence and Soft Computing, 2019

A new evolutionary rough fuzzy integrated machine learning technique for microRNA selection using next-generation sequencing data of breast cancer.

Jnanendra Prasad Sarkar, Indrajit Saha, Somnath Rakshit, Monalisa Pal, Michal Wlasnowolski, Anasua Sarkar, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

2018

Deep Learning for Integrated Analysis of Breast Cancer Subtype Specific Multi-omics Data.

Somnath Rakshit, Indrajit Saha, Subha Shankar Chakraborty, Dariusz Plewczynski

Proceedings of the TENCON 2018, 2018

2017

Multi-levels 3D Chromatin Interactions Prediction Using Epigenomic Profiles.

Ziad Al Bkhetan, Dariusz Plewczynski

Proceedings of the Foundations of Intelligent Systems - 23rd International Symposium, 2017

2016

Divide and Conquer Ensemble Method for Time Series Forecasting.

Jan Kostrzewa, Giovanni Mazzocco, Dariusz Plewczynski

Trans. Comput. Collect. Intell., 2016

Complexity curve: a graphical measure of data complexity and classifier performance.

Julian Zubek, Dariusz Plewczynski

PeerJ Comput. Sci., 2016

3D-GNOME: an integrated web service for structural modeling of the 3D genome.

Przemyslaw Szalaj, Paul J. Michalski, Przemyslaw Wróblewski, Zhonghui Tang, Michal Kadlof, Giovanni Mazzocco, Yijun Ruan, Dariusz Plewczynski

Nucleic Acids Res., 2016

Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis.

Grzegorz Bokota, Marta Magnowska, Tomasz Kusmierczyk, Michal Lukasik, Matylda Roszkowska, Dariusz Plewczynski

Frontiers Comput. Neurosci., 2016

2dSpAn: semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity.

Subhadip Basu, Dariusz Plewczynski, Satadal Saha, Matylda Roszkowska, Marta Magnowska, Ewa Baczynska, Jakub Wlodarczyk

Bioinform., 2016

3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale.

Giovanni Mazzocco, Michal Lazniewski, Piotr Migdal, Teresa Szczepinska, Jan P. Radomski, Dariusz Plewczynski

Database J. Biol. Databases Curation, 2016

2015

Binding Activity Prediction of Cyclin-Dependent Inhibitors.

Indrajit Saha, Benedykt Rak, Shib Sankar Bhowmick, Ujjwal Maulik, Debotosh Bhattacharjee, Uwe Koch, Michal Lazniewski, Dariusz Plewczynski

J. Chem. Inf. Model., 2015

A combined systems and structural modeling approach repositions antibiotics for Mycoplasma genitalium.

Denis Kazakiewicz, Jonathan R. Karr, Karol M. Langner, Dariusz Plewczynski

Comput. Biol. Chem., 2015

Analysis of Next-Generation Sequencing Data of miRNA for the Prediction of Breast Cancer.

Indrajit Saha, Shib Sankar Bhowmick, Filippo Geraci, Marco Pellegrini, Debotosh Bhattacharjee, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of the Swarm, Evolutionary, and Memetic Computing, 2015

MaER: A New Ensemble Based Multiclass Classifier for Binding Activity Prediction of HLA Class II Proteins.

Giovanni Mazzocco, Shib Sankar Bhowmick, Indrajit Saha, Ujjwal Maulik, Debotosh Bhattacharjee, Dariusz Plewczynski

Proceedings of the Pattern Recognition and Machine Intelligence, 2015

PDP-RF: Protein Domain Boundary Prediction Using Random Forest Classifier.

Piyali Chatterjee, Subhadip Basu, Julian Zubek, Mahantapas Kundu, Mita Nasipuri, Dariusz Plewczynski

Proceedings of the Pattern Recognition and Machine Intelligence, 2015

2014

3D-Hit: fast structural comparison of proteins on multicore architectures.

Lukasz Bieniasz-Krzywiec, Maciej Cytowski, Leszek Rychlewski, Dariusz Plewczynski

Optim. Lett., 2014

HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking.

Dariusz Plewczynski, Anna Philips, Marcin von Grotthuss, Leszek Rychlewski, Krzysztof Ginalski

J. Comput. Biol., 2014

Application of RotaSVM for HLA Class II Protein-Peptide Interaction Prediction.

Shib Sankar Bhowmick, Indrajit Saha, Giovanni Mazzocco, Ujjwal Maulik, Luís Rato, Debotosh Bhattacharjee, Dariusz Plewczynski

Proceedings of the BIOINFORMATICS 2014, 2014

A Meta-learning Approach for Protein Function Prediction.

Dariusz Plewczynski, Subhadip Basu

Proceedings of the Advanced Computational Approaches to Biomedical Engineering, 2014

2013

A Consensus Approach for Identification of Protein-Protein Interaction Sites in Homo Sapiens.

Brijesh Kumar Sriwastava, Subhadip Basu, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of the Pattern Recognition and Machine Intelligence, 2013

Multiobjective Differential Evolution: A Comparative Study on Benchmark Problems.

Indrajit Saha, Ujjwal Maulik, Michal Lukasik, Dariusz Plewczynski

Proceedings of the Man-Machine Interactions 3, 2013

Erratum: Evaluation of Machine Learning Algorithms on Protein-Protein Interactions.

Indrajit Saha, Tomas Klingström, Simon Forsberg, Johan Wikander, Julian Zubek, Marcin Kierczak, Dariusz Plewczynski

Proceedings of the Man-Machine Interactions 3, 2013

Evaluation of Machine Learning Algorithms on Protein-Protein Interactions.

Indrajit Saha, Tomas Klingström, Simon Forsberg, Johan Wikander, Julian Zubek, Marcin Kierczak, Dariusz Plewczynski

Proceedings of the Man-Machine Interactions 3, 2013

Generic Framework for Simulation of Cognitive Systems: A Case Study of Color Category Boundaries.

Dariusz Plewczynski, Michal Lukasik, Konrad Kurdej, Julian Zubek, Franciszek Rakowski, Joanna Raczaszek-Leonardi

Proceedings of the Man-Machine Interactions 3, 2013

Information-Sharing in Three Interacting Minds Solving a Simple Perceptual Task.

Michal Denkiewicz, Joanna Raczaszek-Leonardi, Piotr Migdal, Dariusz Plewczynski

Proceedings of the 35th Annual Meeting of the Cognitive Science Society, 2013

2012

SVMeFC: SVM Ensemble Fuzzy Clustering for Satellite Image Segmentation.

Indrajit Saha, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Dariusz Plewczynski

IEEE Geosci. Remote. Sens. Lett., 2012

Improved differential evolution for microarray analysis.

Indrajit Saha, Dariusz Plewczynski, Ujjwal Maulik, Sanghamitra Bandyopadhyay

Int. J. Data Min. Bioinform., 2012

Soft Computing Approach for VLSI Mincut Partitioning: The State of the Arts.

Debasree Maity, Indrajit Saha, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of the Second International Conference on Soft Computing for Problem Solving, 2012

Application of High Quality Amino Acid Indices to AMS 3.0: A Update Note.

Indrajit Saha, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of Seventh International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA 2012), 2012

2011

Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine.

Marcin Nowosielski, Marcin Hoffmann, Lucjan Stanislaw Wyrwicz, Piotr Stepniak, Dariusz Plewczynski, Michal Lazniewski, Krzysztof Ginalski, Leszek Rychlewski

J. Chem. Inf. Model., 2011

VoteDock: Consensus docking method for prediction of protein-ligand interactions.

Dariusz Plewczynski, Michal Lazniewski, Marcin von Grotthuss, Leszek Rychlewski, Krzysztof Ginalski

J. Comput. Chem., 2011

Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database.

Dariusz Plewczynski, Michal Lazniewski, Rafal Augustyniak, Krzysztof Ginalski

J. Comput. Chem., 2011

Unsupervised and Supervised Learning Approaches Together for Microarray Analysis.

Indrajit Saha, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Dariusz Plewczynski

Fundam. Informaticae, 2011

Improvement of new automatic differential fuzzy clustering using SVM classifier for microarray analysis.

Indrajit Saha, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Dariusz Plewczynski

Expert Syst. Appl., 2011

Information-sharing and aggregation models for interacting minds

Piotr Migdal, Michal Denkiewicz, Joanna Raczaszek-Leonardi, Dariusz Plewczynski

CoRR, 2011

Protein-protein interaction and pathway databases, a graphical review.

Tomas Klingström, Dariusz Plewczynski

Briefings Bioinform., 2011

A new multi-objective technique for differential fuzzy clustering.

Indrajit Saha, Ujjwal Maulik, Dariusz Plewczynski

Appl. Soft Comput., 2011

PMAFC: A New Probabilistic Memetic Algorithm Based Fuzzy Clustering.

Indrajit Saha, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of the Foundations of Intelligent Systems - 19th International Symposium, 2011

Landau Theory of Meta-learning.

Dariusz Plewczynski

Proceedings of the Security and Intelligent Information Systems, 2011

Multiobjective Differential Crisp Clustering for Evaluation of Clusters Dynamically.

Indrajit Saha, Ujjwal Maulik, Dariusz Plewczynski

Proceedings of the Man-Machine Interactions 2, 2011

Brainstorming - Agent based Meta-learning Approach.

Dariusz Plewczynski

Proceedings of the ICAART 2011 - Proceedings of the 3rd International Conference on Agents and Artificial Intelligence, Volume 2, 2011

Cognitive architectures in multi-agent systems.

Dariusz Plewczynski

Proceedings of the Biology, Computation and Linguistics - New Interdisciplinary Paradigms, 2011

2010

Landau Theory of Adaptive Integration in Computational Intelligence

Dariusz Plewczynski

CoRR, 2010

AMS 3.0: prediction of post-translational modifications.

Subhadip Basu, Dariusz Plewczynski

BMC Bioinform., 2010

Cancer Classification using SVM-boosted Multiobjective Differential Fuzzy Clustering.

Indrajit Saha, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Dariusz Plewczynski

Proceedings of the STAIRS 2010, 2010

Consensus Multiobjective Differential Crisp Clustering for Categorical Data Analysis.

Indrajit Saha, Dariusz Plewczynski, Ujjwal Maulik, Sanghamitra Bandyopadhyay

Proceedings of the Rough Sets and Current Trends in Computing, 2010

Improvement of Differential Crisp Clustering using ANN Classifier for Unsupervised Pixel Classification of Satellite Image.

Indrajit Saha, Dariusz Plewczynski, Ujjwal Maulik, Sanghamitra Bandyopadhyay

Proceedings of the ICEIS 2010 - Proceedings of the 12th International Conference on Enterprise Information Systems, Volume 2, AIDSS, Funchal, Madeira, Portugal, June 8, 2010

Real-coded differential crisp clustering for MRI brain image segmentation.

Indrajit Saha, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Dariusz Plewczynski

Proceedings of the IEEE Congress on Evolutionary Computation, 2010

2008

3D-Fun: predicting enzyme function from structure.

Marcin von Grotthuss, Dariusz Plewczynski, Gert Vriend, Leszek Rychlewski

Nucleic Acids Res., 2008

TVscreen: Trend Vector Virtual SCREENing of Large Commercial Compounds Collections.

Dariusz Plewczynski

Proceedings of the International Conference on Biocomputation, 2008

2006

Assessing Different Classification Methods for Virtual Screening.

Dariusz Plewczynski, Stéphane A. H. Spieser, Uwe Koch

J. Chem. Inf. Model., 2006

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.

Marcin von Grotthuss, Dariusz Plewczynski, Krzysztof Ginalski, Leszek Rychlewski, Eugene I. Shakhnovich

BMC Bioinform., 2006

2005

AutoMotif server: prediction of single residue post-translational modifications in proteins.

Dariusz Plewczynski, Adrian Tkacz, Lucjan Stanislaw Wyrwicz, Leszek Rychlewski

Bioinform., 2005

2004

Integrated web service for improving alignment quality based on segments comparison.

Dariusz Plewczynski, Leszek Rychlewski, Yuzhen Ye, Lukasz Jaroszewski, Adam Godzik

BMC Bioinform., 2004