Dariusz Plewczynski

According to our database1, Dariusz Plewczynski authored at least 67 papers between 2004 and 2022.

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PhD thesis 


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On csauthors.net:


JUPPI: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1.
IEEE Access, 2022

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies.
BMC Bioinform., 2021

3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome.
Nucleic Acids Res., 2020

The Mixture of Autoregressive Hidden Markov Models of Morphology for Dentritic Spines During Activation Process.
J. Comput. Biol., 2020

Disentangling the complexity of low complexity proteins.
Briefings Bioinform., 2020

Chromatin: A Semi-Structured Polymer.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

3gClust: Human Protein Cluster Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

An empirical Bayes approach for learning directed acyclic graph using MCMC algorithm.
Stat. Anal. Data Min., 2019

Dendritic Spines Taxonomy: The Functional and Structural Classification • Time-Dependent Probabilistic Model of Neuronal Activation.
J. Comput. Biol., 2019

A Multivariate Negative-Binomial Model with Random Effects for Differential Gene-Expression Analysis of Correlated mRNA Sequencing Data.
J. Comput. Biol., 2019

Identification of Epigenetic Biomarkers with the use of Gene Expression and DNA Methylation for Breast Cancer Subtypes.
Proceedings of the TENCON 2019, 2019

Survival Analysis with the Integration of RNA-Seq and Clinical Data to Identify Breast Cancer Subtype Specific Genes.
Proceedings of the Pattern Recognition and Machine Intelligence, 2019

Deep Learning for Detection and Localization of Thoracic Diseases Using Chest X-Ray Imagery.
Proceedings of the Artificial Intelligence and Soft Computing, 2019

A new evolutionary rough fuzzy integrated machine learning technique for microRNA selection using next-generation sequencing data of breast cancer.
Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

Deep Learning for Integrated Analysis of Breast Cancer Subtype Specific Multi-omics Data.
Proceedings of the TENCON 2018, 2018

Multi-levels 3D Chromatin Interactions Prediction Using Epigenomic Profiles.
Proceedings of the Foundations of Intelligent Systems - 23rd International Symposium, 2017

Divide and Conquer Ensemble Method for Time Series Forecasting.
Trans. Comput. Collect. Intell., 2016

Complexity curve: a graphical measure of data complexity and classifier performance.
PeerJ Comput. Sci., 2016

3D-GNOME: an integrated web service for structural modeling of the 3D genome.
Nucleic Acids Res., 2016

Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis.
Frontiers Comput. Neurosci., 2016

2dSpAn: semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity.
Bioinform., 2016

3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale.
Database J. Biol. Databases Curation, 2016

Binding Activity Prediction of Cyclin-Dependent Inhibitors.
J. Chem. Inf. Model., 2015

A combined systems and structural modeling approach repositions antibiotics for Mycoplasma genitalium.
Comput. Biol. Chem., 2015

Analysis of Next-Generation Sequencing Data of miRNA for the Prediction of Breast Cancer.
Proceedings of the Swarm, Evolutionary, and Memetic Computing, 2015

MaER: A New Ensemble Based Multiclass Classifier for Binding Activity Prediction of HLA Class II Proteins.
Proceedings of the Pattern Recognition and Machine Intelligence, 2015

PDP-RF: Protein Domain Boundary Prediction Using Random Forest Classifier.
Proceedings of the Pattern Recognition and Machine Intelligence, 2015

3D-Hit: fast structural comparison of proteins on multicore architectures.
Optim. Lett., 2014

HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking.
J. Comput. Biol., 2014

Application of RotaSVM for HLA Class II Protein-Peptide Interaction Prediction.
Proceedings of the BIOINFORMATICS 2014, 2014

A Meta-learning Approach for Protein Function Prediction.
Proceedings of the Advanced Computational Approaches to Biomedical Engineering, 2014

A Consensus Approach for Identification of Protein-Protein Interaction Sites in Homo Sapiens.
Proceedings of the Pattern Recognition and Machine Intelligence, 2013

Multiobjective Differential Evolution: A Comparative Study on Benchmark Problems.
Proceedings of the Man-Machine Interactions 3, 2013

Erratum: Evaluation of Machine Learning Algorithms on Protein-Protein Interactions.
Proceedings of the Man-Machine Interactions 3, 2013

Evaluation of Machine Learning Algorithms on Protein-Protein Interactions.
Proceedings of the Man-Machine Interactions 3, 2013

Generic Framework for Simulation of Cognitive Systems: A Case Study of Color Category Boundaries.
Proceedings of the Man-Machine Interactions 3, 2013

Information-Sharing in Three Interacting Minds Solving a Simple Perceptual Task.
Proceedings of the 35th Annual Meeting of the Cognitive Science Society, 2013

SVMeFC: SVM Ensemble Fuzzy Clustering for Satellite Image Segmentation.
IEEE Geosci. Remote. Sens. Lett., 2012

Improved differential evolution for microarray analysis.
Int. J. Data Min. Bioinform., 2012

Soft Computing Approach for VLSI Mincut Partitioning: The State of the Arts.
Proceedings of the Second International Conference on Soft Computing for Problem Solving, 2012

Application of High Quality Amino Acid Indices to AMS 3.0: A Update Note.
Proceedings of Seventh International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA 2012), 2012

Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine.
J. Chem. Inf. Model., 2011

VoteDock: Consensus docking method for prediction of protein-ligand interactions.
J. Comput. Chem., 2011

Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database.
J. Comput. Chem., 2011

Unsupervised and Supervised Learning Approaches Together for Microarray Analysis.
Fundam. Informaticae, 2011

Improvement of new automatic differential fuzzy clustering using SVM classifier for microarray analysis.
Expert Syst. Appl., 2011

Information-sharing and aggregation models for interacting minds
CoRR, 2011

Protein-protein interaction and pathway databases, a graphical review.
Briefings Bioinform., 2011

A new multi-objective technique for differential fuzzy clustering.
Appl. Soft Comput., 2011

PMAFC: A New Probabilistic Memetic Algorithm Based Fuzzy Clustering.
Proceedings of the Foundations of Intelligent Systems - 19th International Symposium, 2011

Landau Theory of Meta-learning.
Proceedings of the Security and Intelligent Information Systems, 2011

Multiobjective Differential Crisp Clustering for Evaluation of Clusters Dynamically.
Proceedings of the Man-Machine Interactions 2, 2011

Brainstorming - Agent based Meta-learning Approach.
Proceedings of the ICAART 2011 - Proceedings of the 3rd International Conference on Agents and Artificial Intelligence, Volume 2, 2011

Cognitive architectures in multi-agent systems.
Proceedings of the Biology, Computation and Linguistics - New Interdisciplinary Paradigms, 2011

Landau Theory of Adaptive Integration in Computational Intelligence
CoRR, 2010

AMS 3.0: prediction of post-translational modifications.
BMC Bioinform., 2010

Cancer Classification using SVM-boosted Multiobjective Differential Fuzzy Clustering.
Proceedings of the STAIRS 2010, 2010

Consensus Multiobjective Differential Crisp Clustering for Categorical Data Analysis.
Proceedings of the Rough Sets and Current Trends in Computing, 2010

Improvement of Differential Crisp Clustering using ANN Classifier for Unsupervised Pixel Classification of Satellite Image.
Proceedings of the ICEIS 2010 - Proceedings of the 12th International Conference on Enterprise Information Systems, Volume 2, AIDSS, Funchal, Madeira, Portugal, June 8, 2010

Real-coded differential crisp clustering for MRI brain image segmentation.
Proceedings of the IEEE Congress on Evolutionary Computation, 2010

3D-Fun: predicting enzyme function from structure.
Nucleic Acids Res., 2008

TVscreen: Trend Vector Virtual SCREENing of Large Commercial Compounds Collections.
Proceedings of the International Conference on Biocomputation, 2008

Assessing Different Classification Methods for Virtual Screening.
J. Chem. Inf. Model., 2006

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.
BMC Bioinform., 2006

AutoMotif server: prediction of single residue post-translational modifications in proteins.
Bioinform., 2005

Integrated web service for improving alignment quality based on segments comparison.
BMC Bioinform., 2004