Daniel R. Ripoll

According to our database, Daniel R. Ripoll authored at least 10 papers between 1990 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2021

Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification.

Daniel R. Ripoll, Sidhartha Chaudhury, Anders Wallqvist

PLoS Comput. Biol., 2021

2012

Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase.

Daniel R. Ripoll, Ilja V. Khavrutskii, Sidhartha Chaudhury, Jin Liu, Robert A. Kuschner, Anders Wallqvist, Jaques Reifman

PLoS Comput. Biol., 2012

2009

Global Optimization in Protein Folding.

Daniel R. Ripoll, Adam Liwo, Harold A. Scheraga

Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

2002

Evolution of physics-based methodology for exploring the conformational energy landscape of proteins.

Harold A. Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R. Ripoll, William J. Wedemeyer, Yelena A. Arnautova

J. Comput. Chem., 2002

2000

UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms.

Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999

Surmounting the Multiple-Minima Problem in Protein Folding.

Harold A. Scheraga, Jooyoung Lee, Jaroslaw Pillardy, Yuan-Jie Ye, Adam Liwo, Daniel R. Ripoll

J. Glob. Optim., 1999

1996

Implementation of ECEPP-Based Programs on the IBM SP2 and the SGI Power Challenge Computers.

Timothy J. O'Donnell, Steven Hotovy, Marcia S. Pottle, Daniel R. Ripoll, Harold A. Scheraga

Proceedings of the High-Performance Computing and Networking, 1996

1995

Implementation of the ECEPP Algorithm, the Monte Carlo Minimization Method, and the Electrostatically Driven Monte Carlo Method on the Kendall Square Research KSR1 Computer.

Daniel R. Ripoll, Marcia S. Pottle, Kenneth D. Gibson, Harold A. Scheraga, Adam Liwo

J. Comput. Chem., 1995

1992

A parallel Monte Carlo search algorithm for the conformational analysis of polypeptides.

Daniel R. Ripoll, Stephen J. Thomas

J. Supercomput., 1992

1990

A parallel Monte Carlo search algorithm for the conformational analysis of proteins.

Daniel R. Ripoll, Stephen J. Thomas

Proceedings of the Proceedings Supercomputing '90, New York, NY, USA, November 12-16, 1990, 1990