Cezary Czaplewski

According to our database, Cezary Czaplewski authored at least 23 papers between 1997 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of five.

2024

Assessment of Two Restraint Potentials for Coarse-Grained Chemical-Cross-Link-Assisted Modeling of Protein Structures.

Mateusz Lesniewski, Maciej Pyrka, Cezary Czaplewski, Nguyen Truong Co, Yida Jiang, Zhou Gong, Chun Tang, Adam Liwo

J. Chem. Inf. Model., February, 2024

2023

Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins.

Adam K. Sieradzan, Jordi Sans-Duñó, Emilia A. Lubecka, Cezary Czaplewski, Agnieszka G. Lipska, Henryk Leszczynski, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo

J. Comput. Chem., February, 2023

Long-time scale simulations of virus-like particles from three human-norovirus strains.

Agnieszka G. Lipska, Adam K. Sieradzan, Cezary Czaplewski, Andrea D. Lipinska, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo

J. Comput. Chem., 2023

2021

UNRES-Dock - protein-protein and peptide-protein docking by coarse-grained replica-exchange MD simulations.

Pawel Krupa, Agnieszka S. Karczynska, Magdalena A. Mozolewska, Adam Liwo, Cezary Czaplewski

Bioinform., 2021

2020

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.

Agnieszka S. Karczynska, Karolina Zieba, Urszula Uciechowska, Magdalena A. Mozolewska, Pawel Krupa, Emilia A. Lubecka, Agnieszka G. Lipska, Celina Sikorska, Sergey A. Samsonov, Adam K. Sieradzan, Artur Gieldon, Adam Liwo, Rafal Slusarz, Magdalena Slusarz, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski

J. Chem. Inf. Model., 2020

2018

High Performance Computing with Coarse Grained Model of Biological Macromolecules.

Emilia A. Lubecka, Adam K. Sieradzan, Cezary Czaplewski, Pawel Krupa, Adam Liwo

Supercomput. Front. Innov., 2018

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics.

Cezary Czaplewski, Agnieszka S. Karczynska, Adam K. Sieradzan, Adam Liwo

Nucleic Acids Res., 2018

2017

Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.

Agnieszka S. Karczynska, Cezary Czaplewski, Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Adam Liwo

J. Comput. Chem., 2017

2016

Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field.

Magdalena A. Mozolewska, Pawel Krupa, Bartlomiej Zaborowski, Adam Liwo, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski

J. Chem. Inf. Model., 2016

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.

Pawel Krupa, Magdalena A. Mozolewska, Marta Wisniewska, Yanping Yin, Yi He, Adam K. Sieradzan, Robert Ganzynkowicz, Agnieszka G. Lipska, Agnieszka S. Karczynska, Magdalena Slusarz, Rafal Slusarz, Artur Gieldon, Cezary Czaplewski, Dawid Jagiela, Bartlomiej Zaborowski, Harold A. Scheraga, Adam Liwo

Bioinform., 2016

2015

A Maximum-Likelihood Approach to Force-Field Calibration.

Bartlomiej Zaborowski, Dawid Jagiela, Cezary Czaplewski, Anna Halabis, Agnieszka Lewandowska, Wioletta Zmudzinska, Stanislaw Oldziej, Agnieszka S. Karczynska, Christian Omieczynski, Tomasz K. Wirecki, Adam Liwo

J. Chem. Inf. Model., 2015

Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field.

Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Cezary Czaplewski, Adam Liwo

J. Chem. Inf. Model., 2015

2010

Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations.

Stanislaw Oldziej, Cezary Czaplewski, Adam Liwo, Harold A. Scheraga

Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2006

A Hierarchical Multiscale Approach to Protein Structure Prediction: Production of Low-Resolution Packing Arrangements of Helices and Refinement of the Best Models with a United-Residue Force Field.

Maurizio Chinchio, Cezary Czaplewski, Stanislaw Oldziej, Harold A. Scheraga

Multiscale Model. Simul., 2006

Meta-computations on the CLUSTERIX Grid.

Roman Wyrzykowski, Norbert Meyer, Tomasz Olas, Lukasz Kuczynski, Bogdan Ludwiczak, Cezary Czaplewski, Stanislaw Oldziej

Proceedings of the Applied Parallel Computing. State of the Art in Scientific Computing, 2006

2005

Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC.

Marian Nanias, Maurizio Chinchio, Stanislaw Oldziej, Cezary Czaplewski, Harold A. Scheraga

J. Comput. Chem., 2005

An efficient molecular docking using conformational space annealing.

Kyoungrim Lee, Cezary Czaplewski, Seung-Yeon Kim, Jooyoung Lee

J. Comput. Chem., 2005

2002

Evolution of physics-based methodology for exploring the conformational energy landscape of proteins.

Harold A. Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R. Ripoll, William J. Wedemeyer, Yelena A. Arnautova

J. Comput. Chem., 2002

2000

UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms.

Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999

Essential dynamics/factor analysis for the interpretation of molecular dynamics trajectories.

Rajmund Kazmierkiewicz, Cezary Czaplewski, B. Lammek, Jerzy Ciarkowski

J. Comput. Aided Mol. Des., 1999

1998

United-residue force field for off-lattice protein-structure simulations: III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentials.

Adam Liwo, Rajmund Kazmierkiewicz, Cezary Czaplewski, Malgorzata Groth, Stanislaw Oldziej, Ryszard J. Wawak, Shelly Rackovsky, Matthew R. Pincus, Harold A. Scheraga

J. Comput. Chem., 1998

Molecular modeling of the human vasopressin V2 receptor/agonist complex.

Cezary Czaplewski, Rajmund Kazmierkiewicz, Jerzy Ciarkowski

J. Comput. Aided Mol. Des., 1998

1997

Molecular modeling of the neurophysin I/oxytocin complex.

Rajmund Kazmierkiewicz, Cezary Czaplewski, B. Lammek, Jerzy Ciarkowski

J. Comput. Aided Mol. Des., 1997