David Ochoa

According to our database, David Ochoa authored at least 10 papers between 2010 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Lit-OTAR framework for extracting biological evidences from literature.

Santosh Tirunagari, Shyamasree Saha, Aravind Venkatesan, Daniel Suveges, Miguel Carmona, Annalisa Buniello, David Ochoa, Johanna R. McEntyre, Ellen M. McDonagh, Melissa Harrison

Bioinform., 2025

Associations on the Fly, a new feature aiming to facilitate exploration of the Open Targets Platform evidence.

Carlos Cruz-Castillo, Luca Fumis, Chintan Mehta, Ricardo Esteban Martinez Osorio, Juan María Roldán-Romero, Helena Cornu, Prashant Uniyal, Antonio Solano-Román, Miguel Carmona, David Ochoa, Ellen M. McDonagh, Annalisa Buniello

Bioinform., 2025

2023

The next-generation Open Targets Platform: reimagined, redesigned, rebuilt.

David Ochoa, Andrew Hercules, Miguel Carmona, Daniel Suveges, Jarrod Baker, Cinzia Malangone, Irene Lopez, Alfredo Miranda, Carlos Cruz-Castillo, Luca Fumis, Manuel Bernal Llinares, Kirill Tsukanov, Helena Cornu, Konstantinos D. Tsirigos, Olesya Razuvayevskaya, Annalisa Buniello, Jeremy Schwartzentruber, Mohd Anisul Karim, Bruno Ariano, Ricardo Esteban Martinez Osorio, Javier Ferrer, Xiangyu Ge, Sandra Machlitt-Northen, Asier Gonzalez-Uriarte, Shyamasree Saha, Santosh Tirunagari, Chintan Mehta, Juan María Roldán-Romero, Stuart Horswell, Sarah Young, Maya Ghoussaini, David G. Hulcoop, Ian Dunham, Ellen M. McDonagh

Nucleic Acids Res., January, 2023

2021

Open Targets Platform: supporting systematic drug-target identification and prioritisation.

David Ochoa, Andrew Hercules, Miguel Carmona, Daniel Suveges, Asier Gonzalez-Uriarte, Cinzia Malangone, Alfredo Miranda, Luca Fumis, Denise Carvalho-Silva, Michaela Spitzer, Jarrod Baker, Javier Ferrer, Arwa Bin Raies, Olesya Razuvayevskaya, Adam Faulconbridge, Eirini Petsalaki, Prudence Mutowo-Meullenet, Sandra Machlitt-Northen, Gareth Peat, Elaine McAuley, Chuang Kee Ong, Edward Mountjoy, Maya Ghoussaini, Andrea Pierleoni, Eliseo Papa, Miguel Pignatelli, Gautier Koscielny, Mohd Anisul Karim, Jeremy Schwartzentruber, David G. Hulcoop, Ian Dunham, Ellen M. McDonagh

Nucleic Acids Res., 2021

Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics.

Maya Ghoussaini, Edward Mountjoy, Miguel Carmona, Gareth Peat, Ellen M. Schmidt, Andrew Hercules, Luca Fumis, Alfredo Miranda, Denise Carvalho-Silva, Annalisa Buniello, Tony Burdett, James D. Hayhurst, Jarrod Baker, Javier Ferrer, Asier Gonzalez-Uriarte, Simon Jupp, Mohd Anisul Karim, Gautier Koscielny, Sandra Machlitt-Northen, Cinzia Malangone, Zoë May Pendlington, Paola Roncaglia, Daniel Suveges, Daniel Wright, Olga Vrousgou, Eliseo Papa, Helen E. Parkinson, Jacqueline A. L. MacArthur, John A. Todd, Jeffrey C. Barrett, Jeremy Schwartzentruber, David G. Hulcoop, David Ochoa, Ellen M. McDonagh, Ian Dunham

Nucleic Acids Res., 2021

2017

Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast.

Emanuel J. V. Gonçalves, Zrinka Raguz Nakic, Mattia Zampieri, Omar Wagih, David Ochoa, Uwe Sauer, Pedro Beltrão, Julio Saez-Rodriguez

PLoS Comput. Biol., 2017

Benchmarking substrate-based kinase activity inference using phosphoproteomic data.

Claudia Hernandez-Armenta, David Ochoa, Emanuel J. V. Gonçalves, Julio Saez-Rodriguez, Pedro Beltrão

Bioinform., 2017

2015

Detection of significant protein coevolution.

David Ochoa, David de Juan, Alfonso Valencia, Florencio Pazos

Bioinform., 2015

2011

Selection of organisms for the co-evolution-based study of protein interactions.

Dorota Herman, David Ochoa, David de Juan, Daniel Lopez, Alfonso Valencia, Florencio Pazos

BMC Bioinform., 2011

2010

Studying the co-evolution of protein families with the Mirrortree web server.

David Ochoa, Florencio Pazos

Bioinform., 2010