Dexuan Xie
Orcid: 0000-0002-7072-6275
According to our database1,
Dexuan Xie
authored at least 35 papers
between 1999 and 2024.
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Bibliography
2024
A PNP ion channel deep learning solver with local neural network and finite element input data.
CoRR, 2024
2023
A Poisson-Nernst-Planck single ion channel model and its effective finite element solver.
J. Comput. Phys., May, 2023
2022
An interpretable deep learning workflow for discovering subvisual abnormalities in CT scans of COVID-19 inpatients and survivors.
Nat. Mach. Intell., 2022
An efficient finite element iterative method for solving a nonuniform size modified Poisson-Boltzmann ion channel model.
J. Comput. Phys., 2022
Efficient Generation of Membrane and Solvent Tetrahedral Meshes for Ion Channel Finite Element Calculation.
CoRR, 2022
2021
An improved Poisson-Nernst-Planck ion channel model and numerical studies on effects of boundary conditions, membrane charges, and bulk concentrations.
J. Comput. Chem., 2021
2020
A Rapid, Accurate and Machine-Agnostic Segmentation and Quantification Method for CT-Based COVID-19 Diagnosis.
IEEE Trans. Medical Imaging, 2020
An Effective Finite Element Iterative Solver for a Poisson-Nernst-Planck Ion Channel Model with Periodic Boundary Conditions.
SIAM J. Sci. Comput., 2020
A finite element iterative solver for a PNP ion channel model with Neumann boundary condition and membrane surface charge.
J. Comput. Phys., 2020
A size-modified poisson-boltzmann ion channel model in a solvent of multiple ionic species: Application to voltage-dependent anion channel.
J. Comput. Chem., 2020
J. Comput. Appl. Math., 2020
2019
Study of local and nonlocal Poisson-Boltzmann equations for linear and nonlinear models with spherical symmetry.
J. Comput. Appl. Math., 2019
2018
Series solution of a nonlocal dielectric test model for a solute ball with point charges in an ionic solvent.
Commun. Inf. Syst., 2018
2017
SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation.
J. Comput. Chem., 2017
2016
A nonlocal modified Poisson-Boltzmann equation and finite element solver for computing electrostatics of biomolecules.
J. Comput. Phys., 2016
A new box iterative method for a class of nonlinear interface problems with application in solving Poisson-Boltzmann equation.
J. Comput. Appl. Math., 2016
2015
A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule.
J. Comput. Phys., 2015
2014
New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics.
J. Comput. Phys., 2014
2013
SIAM J. Sci. Comput., 2013
2012
2011
J. Comput. Appl. Math., 2011
Convergence analysis of truncated incomplete Hessian Newton minimization method and application in biomolecular potential energy minimization.
Comput. Optim. Appl., 2011
2009
An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model.
J. Comput. Phys., 2009
Int. J. Comput. Math., 2009
An incomplete Hessian Newton minimization method and its application in a chemical database problem.
Comput. Optim. Appl., 2009
2006
2004
Proceedings of the 33rd International Conference on Parallel Processing Workshops (ICPP 2004 Workshops), 2004
An Effective Compressed Sparse Preconditioner for Large Scale Biomolecular Simulations.
Proceedings of the Computational and Information Science, First International Symposium, 2004
2003
Principal component analysis combined with truncated-Newton minimization for dimensionality reduction of chemical databases.
Math. Program., 2003
2002
2000
An Efficient Projection Protocol for Chemical Databases: Singular Value Decomposition Combined with Truncated-Newton Minimization.
J. Chem. Inf. Comput. Sci., 2000
1999
ACM Trans. Math. Softw., 1999
Efficient Implementation of the Truncated-Newton Algorithm for Large-Scale Chemistry Applications.
SIAM J. Optim., 1999