Dmitry Antipov

According to our database, Dmitry Antipov authored at least 11 papers between 2012 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Extending rnaSPAdes functionality for hybrid transcriptome assembly.

Andrey D. Prjibelski, Giuseppe D. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla L. Lapidus

BMC Bioinform., 2020

SPAligner: alignment of long diverged molecular sequences to assembly graphs.

Tatiana Dvorkina, Dmitry Antipov, Anton I. Korobeynikov, Sergey Nurk

BMC Bioinform., 2020

Metaviral SPAdes: assembly of viruses from metagenomic data.

Dmitry Antipov, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner

Bioinform., 2020

2018

Versatile genome assembly evaluation with QUAST-LG.

Alla Mikheenko, Andrey D. Prjibelski, Vladislav Saveliev, Dmitry Antipov, Alexey A. Gurevich

Bioinform., 2018

2016

rnaQUAST: a quality assessment tool for <i>de novo</i> transcriptome assemblies.

Elena Bushmanova, Dmitry Antipov, Alla L. Lapidus, Vladimir Suvorov, Andrey D. Prjibelski

Bioinform., 2016

hybridSPAdes: an algorithm for hybrid assembly of short and long reads.

Dmitry Antipov, Anton I. Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner

Bioinform., 2016

plasmidSPAdes: assembling plasmids from whole genome sequencing data.

Dmitry Antipov, Nolan Hartwick, Max W. Shen, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner

Bioinform., 2016

2013

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products.

Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

J. Comput. Biol., 2013

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads.

Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

Proceedings of the Research in Computational Molecular Biology, 2013

2012

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing.

Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

J. Comput. Biol., 2012

Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.

Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev

Proceedings of the Research in Computational Molecular Biology, 2012