Max A. Alekseyev

Alexander Barg

CoRR, 2023

On computing sets of integers with maximum number of pairs summing to powers of 2.

[BibT_eX]

[DOI]

CoRR, 2023

2022

Orienting Ordered Scaffolds: Complexity and Algorithms.

[BibT_eX]

[DOI]

SN Comput. Sci., 2022

2020

Computing solutions to the congruence 1n+2n+⋯+nn≡p(modn).

[BibT_eX]

[DOI]

José María Grau

Antonio M. Oller-Marcén

Discret. Appl. Math., 2020

A unified ILP framework for core ancestral genome reconstruction problems.

[BibT_eX]

[DOI]

Bioinform., 2020

Linearization of Ancestral Genomes with Duplicated Genes.

[BibT_eX]

[DOI]

Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019

A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems.

[BibT_eX]

[DOI]

Maria Atamanova

Proceedings of the Algorithms for Computational Biology - 6th International Conference, 2019

2018

Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters.

[BibT_eX]

[DOI]

J. Comput. Biol., 2018

On partitions into squares of distinct integers whose reciprocals sum to 1.

[BibT_eX]

[DOI]

CoRR, 2018

A Rapid Exact Solution for the Guided Genome Halving Problem.

[BibT_eX]

[DOI]

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

Implicit Transpositions in DCJ Scenarios.

[BibT_eX]

[DOI]

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs.

[BibT_eX]

[DOI]

Anna Pologova

J. Comput. Biol., 2017

CAMSA: a tool for comparative analysis and merging of scaffold assemblies.

[BibT_eX]

[DOI]

BMC Bioinform., 2017

A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ.

[BibT_eX]

[DOI]

Proceedings of the Comparative Genomics - 15th International Workshop, 2017

Orientation of Ordered Scaffolds.

[BibT_eX]

[DOI]

Proceedings of the Comparative Genomics - 15th International Workshop, 2017

On problem of orienting ordered scaffolds.

[BibT_eX]

[DOI]

Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017

2016

Computing the Inverses, their Power Sums, and Extrema for Euler's Totient and Other Multiplicative Functions.

[BibT_eX]

[DOI]

J. Integer Seq., 2016

Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss.

[BibT_eX]

[DOI]

J. Comput. Biol., 2016

Making Walks Count: From Silent Circles to Hamiltonian Cycles.

[BibT_eX]

[DOI]

Gerard P. Michon

CoRR, 2016

Transcriptome sequencing based annotation and homologous evidence based scaffolding of <i>Anguilla japonica</i> draft genome.

[BibT_eX]

[DOI]

BMC Genom., 2016

Comparative genomics meets topology: a novel view on genome median and halving problems.

[BibT_eX]

[DOI]

BMC Bioinform., 2016

Weighted de Bruijn Graphs for the Menage Problem and Its Generalizations.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Algorithms - 27th International Workshop, 2016

Multi-genome Scaffold Co-assembly Based on the Analysis of Gene Orders and Genomic Repeats.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

Combinatorial Scoring of Phylogenetic Networks.

[BibT_eX]

[DOI]

Proceedings of the Computing and Combinatorics - 22nd International Conference, 2016

2015

On the Minimal Teaching Sets of Two-Dimensional Threshold Functions.

[BibT_eX]

[DOI]

Marina G. Basova

Nikolai Yu. Zolotykh

SIAM J. Discret. Math., 2015

Scaffold assembly based on genome rearrangement analysis.

[BibT_eX]

[DOI]

Nadia Sitdykova

Comput. Biol. Chem., 2015

A Computational Method for the Rate Estimation of Evolutionary Transpositions.

[BibT_eX]

[DOI]

Rustem Aidagulov

Proceedings of the Bioinformatics and Biomedical Engineering, 2015

Estimation of the true evolutionary distance under the fragile breakage model.

[BibT_eX]

[DOI]

Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

Implicit Transpositions in Shortest DCJ Scenarios.

[BibT_eX]

[DOI]

Proceedings of the Algorithms for Computational Biology, 2015

Generalized Hultman Numbers and the Distribution of Multi-break Distances.

[BibT_eX]

[DOI]

Anna Pologova

Proceedings of the Algorithms for Computational Biology, 2015

2014

On Integral Points on Biquadratic Curves and Near-Multiples of Squares in Lucas Sequences.

[BibT_eX]

[DOI]

Szabolcs Tengely

J. Integer Seq., 2014

Computing the (number of) inverses of Euler's totient and other multiplicative functions.

[BibT_eX]

[DOI]

CoRR, 2014

Linearization of Median Genomes under DCJ.

[BibT_eX]

[DOI]

Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

2013

Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.

[BibT_eX]

[DOI]

J. Comput. Biol., 2013

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products.

[BibT_eX]

[DOI]

Anton I. Korobeynikov

J. Comput. Biol., 2013

Solving the Tower of Hanoi with Random Moves

[BibT_eX]

[DOI]

Toby Berger

CoRR, 2013

The average cardinality of the minimal teaching set of a threshold function on a two-dimensional rectangular grid.

[BibT_eX]

[DOI]

Marina G. Basova

Nikolai Yu. Zolotykh

CoRR, 2013

On integral points on biquadratic curves and near multiples of squares in Lucas sequences.

[BibT_eX]

[DOI]

CoRR, 2013

BayesHammer: Bayesian clustering for error correction in single-cell sequencing.

[BibT_eX]

[DOI]

Sergey I. Nikolenko

Anton I. Korobeynikov

BMC Genom., 2013

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads.

[BibT_eX]

[DOI]

Anton I. Korobeynikov

Proceedings of the Research in Computational Molecular Biology, 2013

2012

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing.

[BibT_eX]

[DOI]

J. Comput. Biol., 2012

On pairwise distances and median score of three genomes under DCJ.

[BibT_eX]

[DOI]

BMC Bioinform., 2012

2011

On the Intersections of Fibonacci, Pell, and Lucas Numbers.

[BibT_eX]

[DOI]

Integers, 2011

Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions.

[BibT_eX]

[DOI]

Proceedings of the Research in Computational Molecular Biology, 2011

2010

On the Number of Two-Dimensional Threshold Functions.

[BibT_eX]

[DOI]

SIAM J. Discret. Math., 2010

Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications.

[BibT_eX]

[DOI]

Commun. Inf. Syst., 2010

Limited Lifespan of Fragile Regions in Mammalian Evolution.

[BibT_eX]

[DOI]

Proceedings of the Comparative Genomics - International Workshop, 2010

2009

Counting Permutations with Two Displacement Values: 11281 [2007, 259].

[BibT_eX]

[DOI]

John Henry Steelman

Am. Math. Mon., 2009

Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes.

[BibT_eX]

[DOI]

Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009

2008

Multi-break rearrangements and chromosomal evolution.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2008

Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes.

[BibT_eX]

[DOI]

J. Comput. Biol., 2008

2007

Colored de Bruijn Graphs and the Genome Halving Problem.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Problem 11281.

[BibT_eX]

[DOI]

Emeric Deutsch

Am. Math. Mon., 2007

Whole Genome Duplications and Contracted Breakpoint Graphs.

[BibT_eX]

[DOI]

SIAM J. Comput., 2007

Are There Rearrangement Hotspots in the Human Genome?

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2007

Whole genome duplications, multi-break rearrangements, and genome halving problem.

[BibT_eX]

[DOI]

Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2007

Multi-break Rearrangements: From Circular to Linear Genomes.

[BibT_eX]

[DOI]

Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007

2004

Genome Halving Problem Revisited.

[BibT_eX]

[DOI]