Son K. Pham

According to our database, Son K. Pham authored at least 9 papers between 2010 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2017

TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes.

Ilya Minkin, Son K. Pham, Paul Medvedev

Bioinform., 2017

2014

ExSPAnder: a universal repeat resolver for DNA fragment assembly.

Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner

Bioinform., 2014

Ragout - a reference-assisted assembly tool for bacterial genomes.

Mikhail Kolmogorov, Brian J. Raney, Benedict Paten, Son K. Pham

Bioinform., 2014

2013

Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly.

Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev

J. Comput. Biol., 2013

Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes.

Ilya Minkin, Anand Patel, Mikhail Kolmogorov, Nikolay Vyahhi, Son K. Pham

Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

2012

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing.

Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner

J. Comput. Biol., 2012

From de Bruijn Graphs to Rectangle Graphs for Genome Assembly.

Nikolay Vyahhi, Alex Pyshkin, Son K. Pham, Pavel A. Pevzner

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

2011

Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers.

Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner

J. Comput. Biol., 2011

2010

DRIMM-Synteny: decomposing genomes into evolutionary conserved segments.

Son K. Pham, Pavel A. Pevzner

Bioinform., 2010