Dmitry Korkin

According to our database1, Dmitry Korkin authored at least 23 papers between 2002 and 2020.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 




Boosting gene expression clustering with system-wide biological information: a robust autoencoder approach.
Int. J. Comput. Biol. Drug Des., 2020

An Exploratory Study of Social Media Analysis for Rare Diseases Using Machine Learning Algorithms: A Case Study of Trigeminal Neuralgia.
Proceedings of the 53rd Hawaii International Conference on System Sciences, 2020

DISPOT: a simple knowledge-based protein domain interaction statistical potential.
Bioinform., 2019

Patterns of amino acid conservation in human and animal immunodeficiency viruses.
Bioinform., 2016

DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.
Database J. Biol. Databases Curation, 2016

Effect-specific analysis of pathogenic SNVs in human interactome: Leveraging edge-based network robustness.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Determining Effects of Non-synonymous SNPs on Protein-Protein Interactions using Supervised and Semi-supervised Learning.
PLoS Comput. Biol., 2014

Uncovering influence links in molecular knowledge networks to streamline personalized medicine.
J. Biomed. Informatics, 2014

PBSalign: Sequence-independent local alignment of protein binding sites.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

PBSword: a web server for searching similar protein-protein binding sites.
Nucleic Acids Res., 2012

DOMMINO: a database of macromolecular interactions.
Nucleic Acids Res., 2012

Literature mining of host-pathogen interactions: comparing feature-based supervised learning and language-based approaches.
Bioinform., 2012

Fast protein binding site comparisons using visual words representation.
Bioinform., 2012

A Fast Multiple Longest Common Subsequence (MLCS) Algorithm.
IEEE Trans. Knowl. Data Eng., 2011

ProteinDBS v2.0: a web server for global and local protein structure search.
Nucleic Acids Res., 2010

An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

A Fast Heuristic Search Algorithm for Finding the Longest Common Subsequence of Multiple Strings.
Proceedings of the Twenty-Fourth AAAI Conference on Artificial Intelligence, 2010

Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments.
Bioinform., 2009

Efficient Dominant Point Algorithms for the Multiple Longest Common Subsequence (MLCS) Problem.
Proceedings of the IJCAI 2009, 2009

An Efficient Parallel Algorithm for the Multiple Longest Common Subsequence (MLCS) Problem.
Proceedings of the 2008 International Conference on Parallel Processing, 2008

Structural Modeling of Protein Interactions by Analogy: Application to PSD-95.
PLoS Comput. Biol., 2006

Multiple genome rearrangement: a general approach via the evolutionary genome graph.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002