Olga V. Kalinina

According to our database, Olga V. Kalinina authored at least 17 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES.

Roman Joeres, Daniel Bojar, Olga V. Kalinina

J. Cheminformatics, December, 2023

MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants.

Sanjay Kumar Srikakulam, Sebastian Keller, Fawaz Dabbaghie, Robert Bals, Olga V. Kalinina

Bioinform., March, 2023

2022

Phylogenetic inference of changes in amino acid propensities with single-position resolution.

Galya V. Klink, Olga V. Kalinina, Georgii A. Bazykin

PLoS Comput. Biol., 2022

Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane.

Carla F. Sousa, Mohamed A. M. Kamal, Robert Richter, Kalanika Elamaldeniya, Rolf W. Hartmann, Martin Empting, Claus-Michael Lehr, Olga V. Kalinina

J. Chem. Inf. Model., 2022

2021

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes.

Andrey A. Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine

PLoS Comput. Biol., 2021

DIGGER: exploring the functional role of alternative splicing in protein interactions.

Zakaria Louadi, Kevin Yuan, Alexander Greß, Olga Tsoy, Olga V. Kalinina, Jan Baumbach, Tim Kacprowski, Markus List

Nucleic Acids Res., 2021

2020

SphereCon - a method for precise estimation of residue relative solvent accessible area from limited structural information.

Alexander Greß, Olga V. Kalinina

Bioinform., 2020

2016

StructMAn: annotation of single-nucleotide polymorphisms in the structural context.

Alexander Greß, Vasily Ramensky, Joachim Büch, Andreas Keller, Olga V. Kalinina

Nucleic Acids Res., 2016

Patterns of amino acid conservation in human and animal immunodeficiency viruses.

Olga S. Voitenko, Andi Dhroso, Anna Feldmann, Dmitry Korkin, Olga V. Kalinina

Bioinform., 2016

BALL-SNPgp - from genetic variants toward computational diagnostics.

Sabine C. Mueller, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller

Bioinform., 2016

2014

Entropy gain due to water release upon ligand binding.

Mazen Ahmad, Olga V. Kalinina, Thomas Lengauer

J. Cheminformatics, 2014

2012

ProtChemSI: a network of protein-chemical structural interactions.

Olga V. Kalinina, Oliver Wichmann, Gordana Apic, Robert B. Russell

Nucleic Acids Res., 2012

2011

Combinations of Protein-Chemical Complex Structures Reveal New Targets for Established Drugs.

Olga V. Kalinina, Oliver Wichmann, Gordana Apic, Robert B. Russell

PLoS Comput. Biol., 2011

2010

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies.

Pavel V. Mazin, Mikhail S. Gelfand, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Anatoly R. Rubinov, Robert B. Russell, Olga V. Kalinina

Algorithms Mol. Biol., 2010

2009

Combining specificity determining and conserved residues improves functional site prediction.

Olga V. Kalinina, Mikhail S. Gelfand, Robert B. Russell

BMC Bioinform., 2009

2004

SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.

Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova

Nucleic Acids Res., 2004

2003

The channel in transporters is formed by residues that are rare in transmembrane helices.

Olga V. Kalinina, Vsevolod J. Makeev, Roman A. Sutormin, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova

Silico Biol., 2003