Elana Simon

According to our database, Elana Simon authored at least 6 papers between 2022 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

On the Relationship Between Activation Outliers and Feature Death in Sparse Autoencoders.

Elana Simon, Etowah Adams, James Y. Zou

CoRR, May, 2026

2025

Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop.

Elizabeth Fahsbender, Alma Andersson, Jeremy Ash, Polina Binder, Daniel Burkhardt, Benjamin Chang, Georg K. Gerber, Anthony Gitter, Patrick Godau, Ankit Gupta, Genevieve Haliburton, Siyu He, Trey Ideker, Ivana Jelic, Aly Khan, Yang-Joon Kim, Aditi S. Krishnapriyan, Jon M. Laurent, Tianyu Liu, Emma Lundberg, Shalin B. Mehta, Rob Moccia, Angela Oliveira Pisco, Katherine S. Pollard, Suresh Ramani, Julio Saez-Rodriguez, Yasin Senbabaoglu, Elana Simon, Srinivasan Sivanandan, Gustavo Stolovitzky, Marc Valer, Bo Wang, Xikun Zhang, James Zou, Katrina Kalantar

CoRR, July, 2025

Towards functional annotation with latent protein language model features.

Jacob Silberg, Elana Simon, James Zou

Proceedings of the 20th Machine Learning in Computational Biology (MLCB), 2025

2024

InterPLM: Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders.

Elana Simon, James Zou

CoRR, 2024

UniTox: Leveraging LLMs to Curate a Unified Dataset of Drug-Induced Toxicity from FDA Labels.

Jacob Silberg, Kyle Swanson, Elana Simon, Angela Zhang, Zaniar Ghazizadeh, Scott Ogden, Hisham Hamadeh, James Y. Zou

Proceedings of the Advances in Neural Information Processing Systems 37: Annual Conference on Neural Information Processing Systems 2024, 2024

2022

ChemBERTa-2: Towards Chemical Foundation Models.

Walid Ahmad, Elana Simon, Seyone Chithrananda, Gabriel Grand, Bharath Ramsundar

CoRR, 2022