Emma Lundberg

According to our database, Emma Lundberg authored at least 12 papers between 2009 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning.

Dongxia Wu, Shiye Su, Yuhui Zhang, Elaine Sui, Emma Lundberg, Emily B. Fox, Serena Yeung-Levy

CoRR, March, 2026

Uncertainty Quantification for Distribution-to-Distribution Flow Matching in Scientific Imaging.

Dongxia Wu, Yuhui Zhang, Serena Yeung-Levy, Emma Lundberg, Emily B. Fox

CoRR, March, 2026

iSight: Towards expert-AI co-assessment for improved immunohistochemistry staining interpretation.

Jacob S. Leiby, Jialu Yao, Pan Lu, George Hu, Anna Davidian, Shunsuke Koga, Olivia Leung, Pravin Patel, Isabella Tondi Resta, Rebecca Rojansky, Derek Sung, Eric Yang, Paul J. Zhang, Emma Lundberg, Dokyoon Kim, Serena Yeung-Levy, James Zou, Thomas Montine, Jeffrey J. Nirschl, Zhi Huang

CoRR, February, 2026

PaperSearchQA: Learning to Search and Reason over Scientific Papers with RLVR.

James Burgess, Jan N. Hansen, Duo Peng, Yuhui Zhang, Alejandro Lozano, Min Woo Sun, Emma Lundberg, Serena Yeung-Levy

Proceedings of the 19th Conference of the European Chapter of the Association for Computational Linguistics, 2026

2025

Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop.

Elizabeth Fahsbender, Alma Andersson, Jeremy Ash, Polina Binder, Daniel Burkhardt, Benjamin Chang, Georg K. Gerber, Anthony Gitter, Patrick Godau, Ankit Gupta, Genevieve Haliburton, Siyu He, Trey Ideker, Ivana Jelic, Aly Khan, Yang-Joon Kim, Aditi S. Krishnapriyan, Jon M. Laurent, Tianyu Liu, Emma Lundberg, Shalin B. Mehta, Rob Moccia, Angela Oliveira Pisco, Katherine S. Pollard, Suresh Ramani, Julio Saez-Rodriguez, Yasin Senbabaoglu, Elana Simon, Srinivasan Sivanandan, Gustavo Stolovitzky, Marc Valer, Bo Wang, Xikun Zhang, James Zou, Katrina Kalantar

CoRR, July, 2025

CellFlow: Simulating Cellular Morphology Changes via Flow Matching.

Yuhui Zhang, Yuchang Su, Chenyu Wang, Tianhong Li, Zoe Wefers, Jeffrey J. Nirschl, James Burgess, Daisy Ding, Alejandro Lozano, Emma Lundberg, Serena Yeung-Levy

CoRR, February, 2025

CellFlux: Simulating Cellular Morphology Changes via Flow Matching.

Yuhui Zhang, Yuchang Su, Chenyu Wang, Tianhong Li, Zoe Wefers, Jeffrey J. Nirschl, James Burgess, Daisy Ding, Alejandro Lozano, Emma Lundberg, Serena Yeung-Levy

Proceedings of the Forty-second International Conference on Machine Learning, 2025

MicroVQA: A Multimodal Reasoning Benchmark for Microscopy-Based Scientific Research.

James Burgess, Jeffrey J. Nirschl, Laura Bravo-Sánchez, Alejandro Lozano, Sanket Rajan Gupte, Jesus G. Galaz-Montoya, Yuhui Zhang, Yuchang Su, Disha Bhowmik, Zachary Coman, Sarina M. Hasan, Alexandra Johannesson, William D. Leineweber, Malvika G. Nair, Ridhi Yarlagadda, Connor Zuraski, Wah Chiu, Sarah Cohen, Jan N. Hansen, Manuel D. Leonetti, Chad Liu, Emma Lundberg, Serena Yeung-Levy

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2025

2024

How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities.

Charlotte Bunne, Yusuf H. Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed, Theo Alexandrov, Mohammed AlQuraishi, Patricia Brennan, Daniel B. Burkhardt, Andrea Califano, Jonah Cool, Abby F. Dernburg, Kirsty Ewing, Emily B. Fox, Matthias Haury, Amy E. Herr, Eric Horvitz, Patrick D. Hsu, Viren Jain, Gregory R. Johnson, Thomas Kalil, David R. Kelley, Shana O. Kelley, Anna Kreshuk, Tim Mitchison, Stephani Otte, Jay Shendure, Nicolas J. Sofroniew, Fabian J. Theis, Christina V. Theodoris, Srigokul Upadhyayula, Marc Valer, Bo Wang, Eric Xing, Serena Yeung-Levy, Marinka Zitnik, Theofanis Karaletsos, Aviv Regev, Emma Lundberg, Jure Leskovec, Stephen R. Quake

CoRR, 2024

2021

Interactive biomedical segmentation tool powered by deep learning and ImJoy.

Wei Ouyang, Trang Le, Hao Xu, Emma Lundberg

F1000Research, 2021

2019

ImJoy: an open-source computational platform for the deep learning era.

Wei Ouyang, Florian Mueller, Martin Hjelmare, Emma Lundberg, Christophe Zimmer

CoRR, 2019

2009

Automated Analysis of Human Protein Atlas Immunofluorescence Images.

Justin Newberg, Jieyue Li, Arvind Rao, Fredrik Ponten, Mathias Uhlen, Emma Lundberg, Robert F. Murphy

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009