Elijah Roberts

According to our database, Elijah Roberts authored at least 9 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Gene regulation network inference using k-nearest neighbor-based mutual information estimation: revisiting an old DREAM.

Lior I. Shachaf, Elijah Roberts, Patrick Cahan, Jie Xiao

BMC Bioinform., December, 2023

2022

A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation.

Yuncong Geng, Christopher Herrick Bohrer, Nicolás Yehya, Hunter Hendrix, Lior I. Shachaf, Jian Liu, Jie Xiao, Elijah Roberts

PLoS Comput. Biol., September, 2022

2020

Modeling binary and graded cone cell fate patterning in the mouse retina.

Kiara C. Eldred, Cameron M. Avelis, Robert J. Johnston Jr, Elijah Roberts

PLoS Comput. Biol., 2020

2017

Biospark: scalable analysis of large numerical datasets from biological simulations and experiments using Hadoop and Spark.

Max Klein, Rati Sharma, Christopher Herrick Bohrer, Cameron M. Avelis, Elijah Roberts

Bioinform., 2017

2014

Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations.

Michael J. Hallock, John E. Stone, Elijah Roberts, Corey Fry, Zaida Luthey-Schulten

Parallel Comput., 2014

2013

Lattice microbes: High-performance stochastic simulation method for the reaction-diffusion master equation.

Elijah Roberts, John E. Stone, Zaida Luthey-Schulten

J. Comput. Chem., 2013

2011

Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study.

Elijah Roberts, Andrew T. Magis, Julio O. Ortiz, Wolfgang Baumeister, Zaida Luthey-Schulten

PLoS Comput. Biol., 2011

2009

Long time-scale simulations of in vivo diffusion using GPU hardware.

Elijah Roberts, John E. Stone, Leonardo Sepulveda, Wen-mei W. Hwu, Zaida Luthey-Schulten

Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

2006

MultiSeq: unifying sequence and structure data for evolutionary analysis.

Elijah Roberts, John Eargle, Dan Wright, Zaida Luthey-Schulten

BMC Bioinform., 2006