Emre Sefer

According to our database, Emre Sefer authored at least 25 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Deep Transformer-Based Asset Price and Direction Prediction.

Abdul Haluk Batur Gezici, Emre Sefer

IEEE Access, 2024

2023

BERT2OME: Prediction of 2′-O-Methylation Modifications From RNA Sequence by Transformer Architecture Based on BERT.

Necla Nisa Soylu, Emre Sefer

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

SGD with Partial Hessian for Deep Recommendation System Optimization.

Gorkem Yencak, Emre Sefer

Proceedings of the IEEE International Conference on Data Mining, 2023

NFT Primary Sale Price and Secondary Sale Prediction via Deep Learning.

Betul Seyhan, Emre Sefer

Proceedings of the 4th ACM International Conference on AI in Finance, 2023

Optimal Reconstruction of Graph Evolution Dynamics for Duplication-Based Models.

Emre Sefer, Samuel Gilmour

Proceedings of the Complex Networks & Their Applications XII, 2023

2022

A comparison of topologically associating domain callers over mammals at high resolution.

Emre Sefer

BMC Bioinform., December, 2022

BioCode: A Data-Driven Procedure to Learn the Growth of Biological Networks.

Emre Sefer

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

MOCMIN: convex inferring of modular low-rank contact networks over COVID diffusion data.

Emre Sefer

Turkish J. Electr. Eng. Comput. Sci., 2022

A Novel GBT-Based Approach for Cross-Channel Fraud Detection on Real-World Banking Transactions.

Ugur Dolu, Emre Sefer

Proceedings of the Artificial Intelligence Applications and Innovations, 2022

Asset Price and Direction Prediction via Deep 2D Transformer and Convolutional Neural Networks.

Tuna Tuncer, Uygar Kaya, Emre Sefer, Onur Alacam, Tugcan Hoser

Proceedings of the 3rd ACM International Conference on AI in Finance, 2022

2021

Hi-C interaction graph analysis reveals the impact of histone modifications in chromatin shape.

Emre Sefer

Appl. Netw. Sci., 2021

2020

Joint Modeling of Histone Modifications in 3D Genome Shape Through Hi-C Interaction Graph.

Emre Sefer

Proceedings of the Complex Networks & Their Applications IX, 2020

2019

Semi-nonparametric modeling of topological domain formation from epigenetic data.

Emre Sefer, Carl Kingsford

Algorithms Mol. Biol., 2019

2016

Diffusion archeology for diffusion progression history reconstruction.

Emre Sefer, Carl Kingsford

Knowl. Inf. Syst., 2016

Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations.

Emre Sefer, Geet Duggal, Carl Kingsford

J. Comput. Biol., 2016

Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments.

Emre Sefer, Ziv Bar-Joseph

Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

2015

Convex Risk Minimization to Infer Networks from probabilistic diffusion data at multiple scales.

Emre Sefer, Carl Kingsford

Proceedings of the 31st IEEE International Conference on Data Engineering, 2015

2014

Diffusion Archaeology for Diffusion Progression History Reconstruction.

Emre Sefer, Carl Kingsford

Proceedings of the 2014 IEEE International Conference on Data Mining, 2014

2013

Resolving spatial inconsistencies in chromosome conformation measurements.

Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford

Algorithms Mol. Biol., 2013

2012

Parsimonious reconstruction of network evolution.

Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford

Algorithms Mol. Biol., 2012

Resolving Spatial Inconsistencies in Chromosome Conformation Data.

Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

The missing models: a data-driven approach for learning how networks grow.

Rob Patro, Geet Duggal, Emre Sefer, Hao Wang, Darya Filippova, Carl Kingsford

Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2012

2011

NetVisia: Heat Map & Matrix Visualization of Dynamic Social Network Statistics & Content.

Robert Gove, Nick Gramsky, Rose Kirby, Emre Sefer, Awalin Sopan, Cody Dunne, Ben Shneiderman, Meirav Taieb-Maimon

Proceedings of the PASSAT/SocialCom 2011, Privacy, 2011

Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction.

Emre Sefer, Carl Kingsford

Proceedings of the Research in Computational Molecular Biology, 2011

2009

Thinking Ahead in Real-Time Search.

Dana S. Nau, Ugur Kuter, Emre Sefer

Proceedings of the 19th International Conference on Automated Planning and Scheduling, 2009