Rob Patro
Orcid: 0000-0001-8463-1675Affiliations:
- University of Maryland, Center for Bioinformatics and Computational Biology, College Park, MD, USA (PhD 2012)
- Stony Brook University, Department of Computer Science, NY, USA (2014-2019)
- Carnegie Mellon University, Lane Center for Computational Biology, Pittsburgh, PA, USA (2012-2014)
According to our database1,
Rob Patro
authored at least 54 papers
between 2009 and 2024.
Collaborative distances:
Collaborative distances:
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Online presence:
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on orcid.org
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on robpatro.com
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Bibliography
2024
Algorithms Mol. Biol., December, 2024
2023
<tt>simpleaf</tt>: a simple, flexible, and scalable framework for single-cell data processing using alevin-fry.
Bioinform., October, 2023
Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023
Proceedings of the Research in Computational Molecular Biology, 2023
2022
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets.
Bioinform., 2022
An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformation.
Bioinform., 2022
Perplexity: evaluating transcript abundance estimation in the absence of ground truth.
Algorithms Mol. Biol., 2022
2021
Bioinform., November, 2021
PLoS Comput. Biol., 2021
Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections.
Bioinform., 2021
2020
PLoS Comput. Biol., 2020
An Efficient, Scalable, and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph Search.
J. Comput. Biol., 2020
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification.
Bioinform., 2020
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.
Bioinform., 2020
2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level.
Bioinform., 2019
An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search.
Proceedings of the Research in Computational Molecular Biology, 2019
2018
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification.
F1000Research, 2018
Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis.
Bioinform., 2018
Bioinform., 2018
Proceedings of the Research in Computational Molecular Biology, 2018
Towards Selective-Alignment: Bridging the Accuracy Gap between Alignment-Based and Alignment-Free Transcript Quantification.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Bioinform., 2017
Bioinform., 2017
Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017
Proceedings of the 2017 ACM International Conference on Management of Data, 2017
2016
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes.
CoRR, 2016
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.
BMC Bioinform., 2016
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
Bioinform., 2016
2015
Bioinform., 2015
Bioinform., 2015
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015
2014
Algorithms Mol. Biol., 2014
2013
Sailfish: Alignment-free Isoform Quantification from RNA-seq Reads using Lightweight Algorithms.
CoRR, 2013
Bioinform., 2013
Algorithms Mol. Biol., 2013
Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013
Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
PhD thesis, 2012
Speeding Up Particle Trajectory Simulations Under Moving Force Fields using Graphic Processing Units.
J. Comput. Inf. Sci. Eng., 2012
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012
Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2012
2011
A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing.
Graph. Model., 2011
IEEE Computer Graphics and Applications, 2011
Proceedings of the Scientific Visualization: Interactions, Features, Metaphors, 2011
MDMap: A system for data-driven layout and exploration of molecular dynamics simulations.
Proceedings of the 2011 IEEE Symposium on Biological Data Visualization, 2011
2010
Proceedings of the Scientific Visualization: Advanced Concepts, 2010
2009
EURASIP J. Image Video Process., 2009