Eugen Czeizler

Orcid: 0000-0002-1607-1554

Affiliations:
  • University of Turku, Finland


According to our database1, Eugen Czeizler authored at least 41 papers between 2002 and 2024.

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Bibliography

2024
Synergizing Data Imputation and Electronic Health Records for Advancing Prostate Cancer Research: Challenges, and Practical Applications.
Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies, 2024

2022
Fixed Parameter Algorithms and Hardness of Approximation Results for the Structural Target Controllability Problem.
Sci. Ann. Comput. Sci., 2022

Network analytics for drug repurposing in COVID-19.
Briefings Bioinform., 2022

Distributed Simulations of DNA Multi-strand Dynamics.
Proceedings of the 12th International Conference on Simulation and Modeling Methodologies, 2022

2021
Network modeling methods for precision medicine.
CoRR, 2021

NetControl4BioMed: a web-based platform for controllability analysis of protein-protein interaction networks.
Bioinform., 2021

VDNA-Lab: A Computational Simulation Platform for DNA Multi-strand Dynamics.
Proceedings of the 11th International Conference on Simulation and Modeling Methodologies, 2021

2020
Identifying efficient controls of complex interaction networks using genetic algorithms.
CoRR, 2020

2019
Simulation of one dimensional staged DNA tile assembly by the signal-passing hierarchical TAM.
Proceedings of the Knowledge-Based and Intelligent Information & Engineering Systems: Proceedings of the 23rd International Conference KES-2019, 2019

2018
Structural Target Controllability of Linear Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

One Dimensional DNA Tiles Self Assembly Model Simulation.
Int. J. Unconv. Comput., 2018

NetControl4BioMed: a pipeline for biomedical data acquisition and analysis of network controllability.
BMC Bioinform., 2018

DNA-Guided Assembly of Nanocellulose Meshes.
Proceedings of the Theory and Practice of Natural Computing - 7th International Conference, 2018

2017
Computational modelling of the kinetic Tile Assembly Model using a rule-based approach.
Theor. Comput. Sci., 2017

2016
Target Controllability of Linear Networks.
Proceedings of the Computational Methods in Systems Biology, 2016

2015
DNA rendering of polyhedral meshes at the nanoscale.
Nat., 2015

An Excursion Through Quantitative Model Refinement.
Proceedings of the Membrane Computing, 2015

2014
Search methods for tile sets in patterned DNA self-assembly.
J. Comput. Syst. Sci., 2014

Design of a Minimal System for Self-replication of Rectangular Patterns of DNA Tiles.
Proceedings of the Theory and Practice of Natural Computing, 2014

2013
Synthesizing minimal tile sets for complex patterns in the framework of patterned DNA self-assembly.
Theor. Comput. Sci., 2013

Yield Optimization Strategies for (DNA) Staged Tile Assembly Systems.
Proceedings of the Theory and Practice of Natural Computing, 2013

2012
Self-assembly Models of Variable Resolution.
Trans. Comp. Sys. Biology, 2012

The Phosphorylation of the Heat Shock Factor as a Modulator for the Heat Shock Response.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentin.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Quantitative Refinement of Reaction Models.
Int. J. Unconv. Comput., 2012

2011
Towards a neighborhood simplification of tile systems: From Moore to quasi-linear dependencies.
Nat. Comput., 2011

An extension of the Lyndon-Schützenberger result to pseudoperiodic words.
Inf. Comput., 2011

Quantitative Model Refinement as a Solution to the Combinatorial Size Explosion of Biomodels.
Proceedings of the 2nd International Workshop on Static Analysis and Systems Biology, 2011

Synthesizing Small and Reliable Tile Sets for Patterned DNA Self-assembly.
Proceedings of the DNA Computing and Molecular Programming - 17th International Conference, 2011

2009
On the descriptional complexity of Watson-Crick automata.
Theor. Comput. Sci., 2009

Geometrical tile design for complex neighborhoods.
Frontiers Comput. Neurosci., 2009

Control Strategies for the Regulation of the Eukaryotic Heat Shock Response.
Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

2008
Unambiguous Automata.
Math. Comput. Sci., 2008

Watson-Crick automata: determinism and state complexity.
Proceedings of the 10th International Workshop on Descriptional Complexity of Formal Systems, 2008

2007
A tight linear bound on the synchronization delay of bijective automata.
Theor. Comput. Sci., 2007

2006
On the power of parallel communicating Watson-Crick automata systems.
Theor. Comput. Sci., 2006

A Short Survey on Watson-Crick Automata.
Bull. EATCS, 2006

Parallel Communicating Watson-Crick Automata Systems.
Acta Cybern., 2006

2005
A Tight Linear Bound on the Neighborhood of Inverse Cellular Automata.
Proceedings of the Automata, Languages and Programming, 32nd International Colloquium, 2005

2004
On the size of the inverse neighborhoods for one-dimensional reversible cellular automata.
Theor. Comput. Sci., 2004

2002
Self-activating P Systems.
Proceedings of the Membrane Computing, International Workshop, 2002


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