Fabrizio Ferrè

According to our database, Fabrizio Ferrè authored at least 14 papers between 2003 and 2018.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2018

BEAM web server: a tool for structural RNA motif discovery.

Marco Pietrosanto, Marta Adinolfi, Riccardo Casula, Gabriele Ausiello, Fabrizio Ferrè, Manuela Helmer-Citterich

Bioinform., 2018

2016

Revealing protein-lncRNA interaction.

Fabrizio Ferrè, Alessio Colantoni, Manuela Helmer-Citterich

Briefings Bioinform., 2016

2015

Web-Beagle: a web server for the alignment of RNA secondary structures.

Eugenio Mattei, Marco Pietrosanto, Fabrizio Ferrè, Manuela Helmer-Citterich

Nucleic Acids Res., 2015

2013

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures.

Luca Parca, Fabrizio Ferrè, Gabriele Ausiello, Manuela Helmer-Citterich

Nucleic Acids Res., 2013

webPDBinder: a server for the identification of ligand binding sites on protein structures.

Valerio Bianchi, Iolanda Mangone, Fabrizio Ferrè, Manuela Helmer-Citterich, Gabriele Ausiello

Nucleic Acids Res., 2013

DBATE: database of alternative transcripts expression.

Valerio Bianchi, Alessio Colantoni, Alberto Calderone, Gabriele Ausiello, Fabrizio Ferrè, Manuela Helmer-Citterich

Database J. Biol. Databases Curation, 2013

2007

DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.

Fabrizio Ferrè, Yann Ponty, W. A. Lorenz, Peter Clote

Nucleic Acids Res., 2007

2006

BTW: a web server for Boltzmann time warping of gene expression time series.

Fabrizio Ferrè, Peter Clote

Nucleic Acids Res., 2006

DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification.

Fabrizio Ferrè, Peter Clote

Nucleic Acids Res., 2006

2005

DiANNA: a web server for disulfide connectivity prediction.

Fabrizio Ferrè, Peter Clote

Nucleic Acids Res., 2005

Functional annotation by identification of local surface similarities: a novel tool for structural genomics.

Fabrizio Ferrè, Gabriele Ausiello, Andreas Zanzoni, Manuela Helmer-Citterich

BMC Bioinform., 2005

Disulfide connectivity prediction using secondary structure information and diresidue frequencies.

Fabrizio Ferrè, Peter Clote

Bioinform., 2005

2004

SURFACE: a database of protein surface regions for functional annotation.

Fabrizio Ferrè, Gabriele Ausiello, Andreas Zanzoni, Manuela Helmer-Citterich

Nucleic Acids Res., 2004

2003

ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins.

Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson

Nucleic Acids Res., 2003