Allegra Via

According to our database1, Allegra Via authored at least 32 papers between 2003 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 




A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning.
Briefings in Bioinformatics, 2019

Lesson Development for Open Source Software Best Practices Adoption.
Proceedings of the 14th IEEE International Conference on e-Science, 2018

The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Research, 2016

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.
Bioinformatics, 2015

TiPs: a database of therapeutic targets in pathogens and associated tools.
Bioinformatics, 2013

iAnn: an event sharing platform for the life sciences.
Bioinformatics, 2013

Best practices in bioinformatics training for life scientists.
Briefings in Bioinformatics, 2013

ELM - the database of eukaryotic linear motifs.
Nucleic Acids Research, 2012

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.
Briefings in Bioinformatics, 2012

Ten Simple Rules for Developing a Short Bioinformatics Training Course.
PLoS Computational Biology, 2011

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.
Nucleic Acids Research, 2011

Phospho.ELM: a database of phosphorylation sites - update 2011.
Nucleic Acids Research, 2011

Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether.
Journal of Chemical Information and Modeling, 2011

ELM: the status of the 2010 eukaryotic linear motif resource.
Nucleic Acids Research, 2010

Bioinformatics training: a review of challenges, actions and support requirements.
Briefings in Bioinformatics, 2010

A structure filter for the Eukaryotic Linear Motif Resource.
BMC Bioinformatics, 2009

Phospho.ELM: a database of phosphorylation sites - update 2008.
Nucleic Acids Research, 2008

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.
BMC Bioinformatics, 2008

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.
Nucleic Acids Research, 2007

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.
Nucleic Acids Research, 2007

SH3-Hunter: discovery of SH3 domain interaction sites in proteins.
Nucleic Acids Research, 2007

False occurrences of functional motifs in protein sequences highlight evolutionary constraints.
BMC Bioinformatics, 2007

Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites.
BMC Bioinformatics, 2007

A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity.
Bioinformatics, 2006

pdbFun: mass selection and fast comparison of annotated PDB residues.
Nucleic Acids Research, 2005

A neural strategy for the inference of SH3 domain-peptide interaction specificity.
BMC Bioinformatics, 2005

Query3d: a new method for high-throughput analysis of functional residues in protein structures.
BMC Bioinformatics, 2005

Seq2Struct: a resource for establishing sequence-structure links.
Bioinformatics, 2005

A structural study for the optimisation of functional motifs encoded in protein sequences.
BMC Bioinformatics, 2004

Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins.
BMC Bioinformatics, 2004

ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins.
Nucleic Acids Research, 2003