Manuela Helmer-Citterich

Orcid: 0000-0001-9530-7504

Affiliations:
  • University of Rome "Tor Vergata", Rome, Italy


According to our database1, Manuela Helmer-Citterich authored at least 40 papers between 2003 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2022
PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res., 2022

2021
BRIO: a web server for RNA sequence and structure motif scan.
Nucleic Acids Res., 2021

2020
PDBe-KB: a community-driven resource for structural and functional annotations.
Nucleic Acids Res., 2020

2019
Kinome-wide identification of phosphorylation networks in eukaryotic proteomes.
Bioinform., 2019

2018
BEAM web server: a tool for structural RNA motif discovery.
Bioinform., 2018

2016
Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Res., 2016

Revealing protein-lncRNA interaction.
Briefings Bioinform., 2016

2015
Web-Beagle: a web server for the alignment of RNA secondary structures.
Nucleic Acids Res., 2015

Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2015

2013
Nucleos: a web server for the identification of nucleotide-binding sites in protein structures.
Nucleic Acids Res., 2013

webPDBinder: a server for the identification of ligand binding sites on protein structures.
Nucleic Acids Res., 2013

Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2013

DBATE: database of alternative transcripts expression.
Database J. Biol. Databases Curation, 2013

2012
Bioinformatics in Italy: BITS2011, the Eighth Annual Meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2012

Modeling gene regulatory network motifs using statecharts.
BMC Bioinform., 2012

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities.
BMC Bioinform., 2012

2011
Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.
Nucleic Acids Res., 2011

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures.
Nucleic Acids Res., 2011

2010
ELM: the status of the 2010 eukaryotic linear motif resource.
Nucleic Acids Res., 2010

2009
A structure filter for the Eukaryotic Linear Motif Resource.
BMC Bioinform., 2009

Structural motifs recurring in different folds recognize the same ligand fragments.
BMC Bioinform., 2009

2008
Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2008

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.
BMC Bioinform., 2008

2007
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.
Nucleic Acids Res., 2007

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.
Nucleic Acids Res., 2007

SH3-Hunter: discovery of SH3 domain interaction sites in proteins.
Nucleic Acids Res., 2007

False occurrences of functional motifs in protein sequences highlight evolutionary constraints.
BMC Bioinform., 2007

Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2007

Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites.
BMC Bioinform., 2007

2006
A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity.
Bioinform., 2006

2005
pdbFun: mass selection and fast comparison of annotated PDB residues.
Nucleic Acids Res., 2005

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.
BMC Bioinform., 2005

Functional annotation by identification of local surface similarities: a novel tool for structural genomics.
BMC Bioinform., 2005

A neural strategy for the inference of SH3 domain-peptide interaction specificity.
BMC Bioinform., 2005

Query3d: a new method for high-throughput analysis of functional residues in protein structures.
BMC Bioinform., 2005

Seq2Struct: a resource for establishing sequence-structure links.
Bioinform., 2005

2004
SURFACE: a database of protein surface regions for functional annotation.
Nucleic Acids Res., 2004

A structural study for the optimisation of functional motifs encoded in protein sequences.
BMC Bioinform., 2004

2003
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins.
Nucleic Acids Res., 2003

iSPOT: a web tool to infer the interaction specificity of families of protein modules.
Nucleic Acids Res., 2003


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