Fiona S. L. Brinkman
Orcid: 0000-0002-0584-4099
According to our database1,
Fiona S. L. Brinkman
authored at least 41 papers
between 2001 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Bibliography
2023
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.
Nucleic Acids Res., January, 2023
2021
PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations.
Nucleic Acids Res., 2021
2020
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.
Nucleic Acids Res., 2020
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data.
Bioinform., 2020
2019
Briefings Bioinform., 2019
2018
2017
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database.
Nucleic Acids Res., 2017
Nucleic Acids Res., 2017
Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, 2017
Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017
2016
Enhanced annotations and features for comparing thousands of <i>Pseudomonas</i> genomes in the Pseudomonas genome database.
Nucleic Acids Res., 2016
PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures.
Nucleic Acids Res., 2016
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
2015
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis.
Nucleic Acids Res., 2015
Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.
BMC Bioinform., 2015
GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications.
Bioinform., 2015
CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization.
Database J. Biol. Databases Curation, 2015
2013
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.
Nucleic Acids Res., 2013
Nucleic Acids Res., 2013
InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation.
Nucleic Acids Res., 2013
2012
Bioinform., 2012
2011
PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea.
Nucleic Acids Res., 2011
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for <i>Pseudomonas</i> genomes.
Nucleic Acids Res., 2011
Comput. Stat. Data Anal., 2011
2010
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.
Bioinform., 2010
2009
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.
Nucleic Acids Res., 2009
IslandViewer: an integrated interface for computational identification and visualization of genomic islands.
Bioinform., 2009
2008
BMC Bioinform., 2008
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.
Bioinform., 2008
2006
BMC Bioinform., 2006
2005
<i>Pseudomonas aeruginosa</i> Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.
Nucleic Acids Res., 2005
Nucleic Acids Res., 2005
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis.
Bioinform., 2005
2004
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
2003
PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria.
Nucleic Acids Res., 2003
Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 24, 2003
2001