Süleyman Cenk Sahinalp
Orcid: 0000-0002-5050-0682Affiliations:
- Simon Fraser University, Burnaby, Canada
According to our database1,
Süleyman Cenk Sahinalp
authored at least 112 papers
between 1994 and 2022.
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Bibliography
2022
Nat. Comput. Sci., 2022
ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes Using Short Read Data.
Proceedings of the Research in Computational Molecular Biology, 2022
2021
Studying the History of Tumor Evolution from Single-Cell Sequencing Data by Exploring the Space of Binary Matrices.
J. Comput. Biol., 2021
2020
J. Comput. Biol., 2020
PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
Bioinform., 2020
2019
Proceedings of the Encyclopedia of Big Data Technologies., 2019
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
Bioinform., 2019
A multi-labeled tree dissimilarity measure for comparing "clonal trees" of tumor progression.
Algorithms Mol. Biol., 2019
Proceedings of the Research in Computational Molecular Biology, 2019
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
2018
IEEE Trans. Knowl. Data Eng., 2018
Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
Bioinform., 2018
Bioinform., 2018
A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression.
Proceedings of the 18th International Workshop on Algorithms in Bioinformatics, 2018
Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing Data.
Proceedings of the Research in Computational Molecular Biology, 2018
Proceedings of the Research in Computational Molecular Biology, 2018
2017
J. Comput. Biol., 2017
SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.
Bioinform., 2017
PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS.
Bioinform., 2017
2016
Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016
2015
CoRR, 2015
Bioinform., 2015
Proceedings of the Research in Computational Molecular Biology, 2015
2014
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.
Nucleic Acids Res., 2014
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.
Bioinform., 2014
Proceedings of the Research in Computational Molecular Biology, 2014
2012
Dissect: detection and characterization of novel structural alterations in transcribed sequences.
Bioinform., 2012
Bioinform., 2012
CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population.
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012
Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing.
Proceedings of the Research in Computational Molecular Biology, 2012
2011
PLoS Comput. Biol., 2011
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.
Bioinform., 2011
Bioinform., 2011
Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes.
Proceedings of the Research in Computational Molecular Biology, 2011
2010
Applicability Domains for Classification Problems: Benchmarking of Distance to Models for Ames Mutagenicity Set.
J. Chem. Inf. Model., 2010
Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length.
J. Comput. Biol., 2010
Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets.
J. Comput. Biol., 2010
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.
Bioinform., 2010
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.
Bioinform., 2010
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.
Bioinform., 2010
Algorithms Mol. Biol., 2010
Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties.
Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010
Proceedings of the Research in Computational Molecular Biology, 2010
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
2009
The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study.
J. Comput. Biol., 2009
Bioinform., 2009
Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks.
Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009
Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009
Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes.
Proceedings of the Research in Computational Molecular Biology, 2009
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
2008
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
2007
Novel approaches for small biomolecule classification and structural similarity search.
SIGKDD Explor., 2007
Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution.
PLoS Comput. Biol., 2007
Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data.
PLoS Comput. Biol., 2007
J. Comput. Syst. Sci., 2007
Proceedings of the Biocomputing 2007, 2007
2006
Theor. Comput. Sci., 2006
Comparative QSAR- and Fragments Distribution Analysis of Drugs, Druglikes, Metabolic Substances, and Antimicrobial Compounds.
J. Chem. Inf. Model., 2006
J. Comput. Biol., 2006
Proceedings of the Seventeenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2006
Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation.
Proceedings of the Systems Biology and Computational Proteomics, 2006
Proceedings of the Research in Computational Molecular Biology, 2006
Distance based algorithms for small biomolecule classification and structural similarity search.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
2005
Nucleic Acids Res., 2005
Proceedings of the Systems Biology and Regulatory Genomics, 2005
Proceedings of the Developments in Language Theory, 9th International Conference, 2005
2004
Theor. Comput. Sci., 2004
The Role of Unequal Crossover in Alpha-Satellite DNA Evolution: A Computational Analysis.
J. Comput. Biol., 2004
J. Bioinform. Comput. Biol., 2004
Proceedings of the LATIN 2004: Theoretical Informatics, 2004
Proceedings of the Automata, Languages and Programming: 31st International Colloquium, 2004
2003
Proceedings of the 19th International Conference on Data Engineering, 2003
Proceedings of the FST TCS 2003: Foundations of Software Technology and Theoretical Computer Science, 2003
2002
Proceedings of the LATIN 2002: Theoretical Informatics, 2002
Proceedings of the Combinatorial Pattern Matching, 13th Annual Symposium, 2002
Proceedings of the Combinatorial Pattern Matching, 13th Annual Symposium, 2002
2001
ACM J. Exp. Algorithmics, 2001
Proceedings of the Proceedings on 33rd Annual ACM Symposium on Theory of Computing, 2001
Proceedings of the Proceedings IEEE INFOCOM 2001, 2001
Proceedings of the Automata, Languages and Programming, 28th International Colloquium, 2001
Proceedings of the Algorithm Engineering and Experimentation, Third International Workshop, 2001
2000
Proceedings of the Thirty-Second Annual ACM Symposium on Theory of Computing, 2000
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000
1999
Proceedings of the Thirty-First Annual ACM Symposium on Theory of Computing, 1999
Proceedings of the Tenth Annual ACM-SIAM Symposium on Discrete Algorithms, 1999
1998
Implementation and Experimental Evaluation of Flexible Parsing for Dynamic Dictionary Based Data Compression.
Proceedings of the Algorithm Engineering, 2nd International Workshop, 1998
Proceedings of the Tenth Annual ACM Symposium on Parallel Algorithms and Architectures, 1998
1996
Efficient Approximate and Dynamic Matching of Patterns Using a Labeling Paradigm (extended abstract).
Proceedings of the 37th Annual Symposium on Foundations of Computer Science, 1996
1994
Proceedings of the Twenty-Sixth Annual ACM Symposium on Theory of Computing, 1994
Proceedings of the Algorithms and Complexity, Second Italian Conference, 1994