Florian Borchert

Orcid: 0000-0003-1079-6500

According to our database1, Florian Borchert authored at least 17 papers between 2020 and 2024.

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Bibliography

2024
medBERT.de: A comprehensive German BERT model for the medical domain.
Expert Syst. Appl., March, 2024

2023
Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards.
SN Comput. Sci., July, 2023

Programming techniques for improving rule readability for rule-based information extraction natural language processing pipelines of unstructured and semi-structured medical texts.
Health Informatics J., April, 2023

Understanding emotions in the context of IT-based self-monitoring.
CoRR, 2023

xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization.
CoRR, 2023

Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2023

Resolving Elliptical Compounds in German Medical Text.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text.
Proceedings of the Artificial Intelligence in Medicine, 2023

Machine Learning Based Prediction of Incident Cases of Crohn's Disease Using Electronic Health Records from a Large Integrated Health System.
Proceedings of the Artificial Intelligence in Medicine, 2023

A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation.
Proceedings of the 5th Clinical Natural Language Processing Workshop, 2023

2022
GGPONC 2.0 - The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers.
Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

HPI-DHC @ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval.
Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022

2021
Knowledge bases and software support for variant interpretation in precision oncology.
Briefings Bioinform., 2021

An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software.
Proceedings of the ICT for Health, Accessibility and Wellbeing, 2021

A Comparison of Concept Embeddings for German Clinical Corpora.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines.
Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, 2020


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