Guido Sanguinetti

Orcid: 0000-0002-6663-8336

Affiliations:
  • SISSA: Trieste, Italy
  • University of Edinburgh, UK


According to our database1, Guido Sanguinetti authored at least 85 papers between 2005 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Quantifying lottery tickets under label noise: accuracy, calibration, and complexity.
Proceedings of the Uncertainty in Artificial Intelligence, 2023

Attacks on Online Learners: a Teacher-Student Analysis.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

2022
SCRaPL: A Bayesian hierarchical framework for detecting technical associates in single cell multiomics data.
PLoS Comput. Biol., 2022

On the Robustness of Bayesian Neural Networks to Adversarial Attacks.
CoRR, 2022

Resilience of Bayesian Layer-Wise Explanations under Adversarial Attacks.
Proceedings of the International Joint Conference on Neural Networks, 2022

Bayesian Learning of Effective Chemical Master Equations in Crowded Intracellular Conditions.
Proceedings of the Computational Methods in Systems Biology, 2022

2021
Random Projections for Improved Adversarial Robustness.
Proceedings of the International Joint Conference on Neural Networks, 2021

2020
The MOBSTER R package for tumour subclonal deconvolution from bulk DNA whole-genome sequencing data.
BMC Bioinform., 2020

Robustness of Bayesian Neural Networks to Gradient-Based Attacks.
Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

2019
Statistical Abstraction for Multi-scale Spatio-temporal Systems.
ACM Trans. Model. Comput. Simul., 2019

Neural field models for latent state inference: Application to large-scale neuronal recordings.
PLoS Comput. Biol., 2019

Geometric fluid approximation for general continuous-time Markov chains.
CoRR, 2019

Wasserstein Distances for Estimating Parameters in Stochastic Reaction Networks.
Proceedings of the Computational Methods in Systems Biology, 2019

Bayesian Parameter Estimation for Stochastic Reaction Networks from Steady-State Observations.
Proceedings of the Computational Methods in Systems Biology, 2019

2018
ProPPA: Probabilistic Programming for Stochastic Dynamical Systems.
ACM Trans. Model. Comput. Simul., 2018

Autoregressive Point Processes as Latent State-Space Models: A Moment-Closure Approach to Fluctuations and Autocorrelations.
Neural Comput., 2018

Preface.
Proceedings of SASB 2018, 2018

Intrinsic Geometric Vulnerability of High-Dimensional Artificial Intelligence.
CoRR, 2018

BPRMeth: a flexible Bioconductor package for modelling methylation profiles.
Bioinform., 2018

Bayesian Statistical parametric Verification and synthesis by Machine Learning.
Proceedings of the 2018 Winter Simulation Conference, 2018

Probabilistic Model Checking for Continuous-Time Markov Chains via Sequential Bayesian Inference.
Proceedings of the Quantitative Evaluation of Systems - 15th International Conference, 2018

2017
Unbiased Bayesian inference for population Markov jump processes via random truncations.
Stat. Comput., 2017

Policy learning in continuous-time Markov decision processes using Gaussian Processes.
Perform. Evaluation, 2017

On learning the structure of Bayesian Networks and submodular function maximization.
CoRR, 2017

2016
Smoothed model checking for uncertain Continuous-Time Markov Chains.
Inf. Comput., 2016

DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks.
BMC Bioinform., 2016

Higher order methylation features for clustering and prediction in epigenomic studies.
Bioinform., 2016

Statistical modeling of isoform splicing dynamics from RNA-seq time series data.
Bioinform., 2016

Property-Driven State-Space Coarsening for Continuous Time Markov Chains.
Proceedings of the Quantitative Evaluation of Systems - 13th International Conference, 2016

Policy Learning for Time-Bounded Reachability in Continuous-Time Markov Decision Processes via Doubly-Stochastic Gradient Ascent.
Proceedings of the Quantitative Evaluation of Systems - 13th International Conference, 2016

Matching Models Across Abstraction Levels with Gaussian Processes.
Proceedings of the Computational Methods in Systems Biology, 2016

2015
System design of stochastic models using robustness of temporal properties.
Theor. Comput. Sci., 2015

Learning and Designing Stochastic Processes from Logical Constraints.
Log. Methods Comput. Sci., 2015

A Bayesian approach for structure learning in oscillating regulatory networks.
Bioinform., 2015

M<sup>3</sup>D: a kernel-based test for spatially correlated changes in methylation profiles.
Bioinform., 2015

Combining tree-based and dynamical systems for the inference of gene regulatory networks.
Bioinform., 2015

Machine Learning Methods in Statistical Model Checking and System Design - Tutorial.
Proceedings of the Runtime Verification - 6th International Conference, 2015

U-Check: Model Checking and Parameter Synthesis Under Uncertainty.
Proceedings of the Quantitative Evaluation of Systems, 12th International Conference, 2015

Studying Emergent Behaviours in Morphogenesis Using Signal Spatio-Temporal Logic.
Proceedings of the Hybrid Systems Biology - Fourth International Workshop, 2015

Experimental Design for Inference over the A. thaliana Circadian Clock Network.
Proceedings of the Computational Methods in Systems Biology, 2015

Efficient Stochastic Simulation of Systems with Multiple Time Scales via Statistical Abstraction.
Proceedings of the Computational Methods in Systems Biology, 2015

2014
Smoothed Model Checking for Uncertain Continuous Time Markov Chains.
CoRR, 2014

Probabilistic Programming Process Algebra.
Proceedings of the Quantitative Evaluation of Systems - 11th International Conference, 2014

A Statistical Approach for Computing Reachability of Non-linear and Stochastic Dynamical Systems.
Proceedings of the Quantitative Evaluation of Systems - 11th International Conference, 2014

Temporal Logic Based Monitoring of Assisted Ventilation in Intensive Care Patients.
Proceedings of the Leveraging Applications of Formal Methods, Verification and Validation. Specialized Techniques and Applications, 2014

Data-Driven Statistical Learning of Temporal Logic Properties.
Proceedings of the Formal Modeling and Analysis of Timed Systems, 2014

2013
Semisupervised Multitask Learning With Gaussian Processes.
IEEE Trans. Neural Networks Learn. Syst., 2013

A stochastic hybrid model of a biological filter.
Proceedings of the Proceedings Third International Workshop on Hybrid Autonomous Systems, 2013

Learning Temporal Logical Properties Discriminating ECG models of Cardiac Arrhytmias.
CoRR, 2013

On the Robustness of Temporal Properties for Stochastic Models.
Proceedings of the Proceedings Second International Workshop on Hybrid Systems and Biology, 2013

Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics.
Bioinform., 2013

Approximate inference in latent Gaussian-Markov models from continuous time observations.
Proceedings of the Advances in Neural Information Processing Systems 26: 27th Annual Conference on Neural Information Processing Systems 2013. Proceedings of a meeting held December 5-8, 2013

ABC-Fun: A Probabilistic Programming Language for Biology.
Proceedings of the Computational Methods in Systems Biology, 2013

Modeling Conflict Dynamics with Spatio-temporal Data.
Springer Briefs in Applied Sciences and Technology, Springer, ISBN: 978-3-319-01038-0, 2013

2012
Variational Estimation in Spatiotemporal Systems From Continuous and Point-Process Observations.
IEEE Trans. Signal Process., 2012

A Case Study on Meta-Generalising: A Gaussian Processes Approach.
J. Mach. Learn. Res., 2012

Multi-task learning for pKa prediction.
J. Comput. Aided Mol. Des., 2012

A subsystems approach for parameter estimation of ODE models of hybrid systems
Proceedings of the Proceedings First International Workshop on Hybrid Systems and Biology, 2012

2011
A Perturbative Approach to Novelty Detection in Autoregressive Models.
IEEE Trans. Signal Process., 2011

Bayesian Multitask Classification With Gaussian Process Priors.
IEEE Trans. Neural Networks, 2011

Online Variational Inference for State-Space Models with Point-Process Observations.
Neural Comput., 2011

Approximate inference of the bandwidth in multivariate kernel density estimation.
Comput. Stat. Data Anal., 2011

Reconstructing transcription factor activities in hierarchical transcription network motifs.
Bioinform., 2011

Large-scale learning of combinatorial transcriptional dynamics from gene expression.
Bioinform., 2011

Inference in continuous-time change-point models.
Proceedings of the Advances in Neural Information Processing Systems 24: 25th Annual Conference on Neural Information Processing Systems 2011. Proceedings of a meeting held 12-14 December 2011, 2011

2010
Information theoretic novelty detection.
Pattern Recognit., 2010

Parameter estimation and inference for stochastic reaction-diffusion systems: application to morphogenesis in D. melanogaster.
BMC Syst. Biol., 2010

Learning combinatorial transcriptional dynamics from gene expression data.
Bioinform., 2010

TFInfer: a tool for probabilistic inference of transcription factor activities.
Bioinform., 2010

Approximate inference in continuous time Gaussian-Jump processes.
Proceedings of the Advances in Neural Information Processing Systems 23: 24th Annual Conference on Neural Information Processing Systems 2010. Proceedings of a meeting held 6-9 December 2010, 2010

Approximate Inference for Stochastic Reaction processes.
Proceedings of the Learning and Inference in Computational Systems Biology., 2010

2009
puma: a Bioconductor package for propagating uncertainty in microarray analysis.
BMC Bioinform., 2009

Switching regulatory models of cellular stress response.
Bioinform., 2009

A new probabilistic generative model of parameter inference in biochemical networks.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

2008
Dimensionality Reduction of Clustered Data Sets.
IEEE Trans. Pattern Anal. Mach. Intell., 2008

MMG: a probabilistic tool to identify submodules of metabolic pathways.
Bioinform., 2008

Identifying differentially expressed subnetworks with MMG.
Bioinform., 2008

2007
Variational inference for Markov jump processes.
Proceedings of the Advances in Neural Information Processing Systems 20, 2007

2006
A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription.
Bioinform., 2006

Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities.
Bioinform., 2006

Propagating uncertainty in microarray data analysis.
Briefings Bioinform., 2006

Modelling transcriptional regulation using Gaussian Processes.
Proceedings of the Advances in Neural Information Processing Systems 19, 2006

Missing Data in Kernel PCA.
Proceedings of the Machine Learning: ECML 2006, 2006

Identifying Submodules of Cellular Regulatory Networks.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2006

2005
Accounting for probe-level noise in principal component analysis of microarray data.
Bioinform., 2005


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