Mustafa Khammash

According to our database1, Mustafa Khammash authored at least 85 papers between 1992 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Awards

IEEE Fellow

IEEE Fellow 2007, "For contributions to robust control and its applications".

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2020
Fundamental Limits and Tradeoffs in Autocatalytic Pathways.
IEEE Trans. Autom. Control., 2020

Ergodicity Analysis and Antithetic Integral Control of a Class of Stochastic Reaction Networks with Delays.
SIAM J. Appl. Dyn. Syst., 2020

Ergodicity, Output-Controllability, and Antithetic Integral Control of Uncertain Stochastic Reaction Networks.
CoRR, 2020

Stochastic filters based on hybrid approximations of multiscale stochastic reaction networks.
Proceedings of the 59th IEEE Conference on Decision and Control, 2020

2019
Quantification of loading effects in interconnections of stochastic reaction networks.
Proceedings of the 17th European Control Conference, 2019

Bayesian Parameter Estimation for Stochastic Reaction Networks from Steady-State Observations.
Proceedings of the Computational Methods in Systems Biology, 2019

An antithetic integral rein controller for bio-molecular networks.
Proceedings of the 58th IEEE Conference on Decision and Control, 2019

Optimal Parameter Tuning of Feedback Controllers with Application to Biomolecular Antithetic Integral Control.
Proceedings of the 58th IEEE Conference on Decision and Control, 2019

A linear constrained integral feedback for a class of reaction systems with absolute concentration robustness.
Proceedings of the 58th IEEE Conference on Decision and Control, 2019

2018
Estimation of Parameter Sensitivities for Stochastic Reaction Networks Using Tau-Leap Simulations.
SIAM J. Numer. Anal., 2018

Computational Identification of Irreducible State-Spaces for Stochastic Reaction Networks.
SIAM J. Appl. Dyn. Syst., 2018

In-Silico Proportional-Integral Moment Control of Stochastic Reaction Networks with Applications to Gene Expression (with Dimerization).
CoRR, 2018

Variance reduction in stochastic gene expression under integral feedback control.
Proceedings of the 57th IEEE Conference on Decision and Control, 2018

2017
Variance reduction for antithetic integral control of stochastic reaction networks.
CoRR, 2017

Simple interval observers for linear impulsive systems with applications to sampled-data and switched systems.
CoRR, 2017

Stability analysis of LPV systems with piecewise differentiable parameters.
CoRR, 2017

Robust and structural ergodicity analysis of stochastic biomolecular networks involving synthetic antithetic integral controllers.
CoRR, 2017

Parameter inference for stochastic single-cell dynamics from lineage tree data.
BMC Syst. Biol., 2017

Challenges at the interface of control engineering and synthetic biology.
Proceedings of the 56th IEEE Annual Conference on Decision and Control, 2017

Finding the steady-state solution of the chemical master equation.
Proceedings of the IEEE Conference on Control Technology and Applications, 2017

2016
Implementation Considerations, Not Topological Differences, Are the Main Determinants of Noise Suppression Properties in Feedback and Incoherent Feedforward Circuits.
PLoS Comput. Biol., 2016

Interval peak-to-peak observers for continuous- and discrete-time systems with persistent inputs and delays.
Autom., 2016

Approximate filtering distributions for characterizing input-output behavior of biochemical networks.
Proceedings of the 15th European Control Conference, 2016

A molecular implementation of the least mean squares estimator.
Proceedings of the 55th IEEE Conference on Decision and Control, 2016

Robust ergodicity and tracking in antithetic integral control of stochastic biochemical reaction networks.
Proceedings of the 55th IEEE Conference on Decision and Control, 2016

2015
Identification and Control of Cell Populations.
Proceedings of the Encyclopedia of Systems and Control, 2015

Stochastic Description of Biochemical Networks.
Proceedings of the Encyclopedia of Systems and Control, 2015

Sign properties of Metzler matrices with applications.
CoRR, 2015

Adaptive Model Predictive Control of an optogenetic system.
Proceedings of the 54th IEEE Conference on Decision and Control, 2015

2014
Automatic Crosswind Flight of Tethered Wings for Airborne Wind Energy: Modeling, Control Design, and Experimental Results.
IEEE Trans. Control. Syst. Technol., 2014

On Sensor Fusion for Airborne Wind Energy Systems.
IEEE Trans. Control. Syst. Technol., 2014

Overexpression of Heat Shock Protein 72 Attenuates NF-κB Activation Using a Combination of Regulatory Mechanisms in Microglia.
PLoS Comput. Biol., 2014

Direct Solution of the Chemical Master Equation Using Quantized Tensor Trains.
PLoS Comput. Biol., 2014

A Scalable Computational Framework for Establishing Long-Term Behavior of Stochastic Reaction Networks.
PLoS Comput. Biol., 2014

Generic low-copy integral feedback for robust in-vivo adaptation.
CoRR, 2014

Optimization-based Lyapunov function construction for continuous-time Markov chains with affine transition rates.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014

Detection of loading effects in bacterial stress response using biochemical stochasticity.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014

2013
Unbiased Estimation of Parameter Sensitivities for Stochastic Chemical Reaction Networks.
SIAM J. Sci. Comput., 2013

Spatial Stochastic Dynamics Enable Robust Cell Polarization.
PLoS Comput. Biol., 2013

SPSens: a software package for stochastic parameter sensitivity analysis of biochemical reaction networks.
Bioinform., 2013

The signal within the noise: efficient inference of stochastic gene regulation models using fluorescence histograms and stochastic simulations.
Bioinform., 2013

Automatic control of tethered wings for airborne wind energy: Design and experimental results.
Proceedings of the 12th European Control Conference, 2013

Direct numerical solution of algebraic Lyapunov equations for large-scale systems using Quantized Tensor Trains.
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

Global identifiability of a simple linear model for gene expression analysis.
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

Integral population control of a quadratic dimerization process.
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

On control of tethered wings for airborne wind energy.
Proceedings of the American Control Conference, 2013

Sensor fusion for tethered wings in airborne wind energy.
Proceedings of the American Control Conference, 2013

2012
Simulation of stochastic systems via polynomial chaos expansions and convex optimization
CoRR, 2012

Stability analysis of quasi-polynomial dynamical systems with applications to biological network models.
Autom., 2012

A spectral methods-based solution of the Chemical Master Equation for gene regulatory networks.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012

Measurement noise distribution as a metric for parameter estimation in dynamical systems.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012

Nonlinear stochastic model predictive control via regularized polynomial chaos expansions.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012

Computer control of gene expression: Robust setpoint tracking of protein mean and variance using integral feedback.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012

2011
Quantitative characterization and analysis of the dynamic NF-kappaB response in microglia.
BMC Bioinform., 2011

Flow cytometry based state aggregation of a stochastic model of protein expression.
Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

Model selection in stochastic chemical reaction networks using flow cytometry data.
Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

On the guaranteed accuracy of Polynomial Chaos Expansions.
Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

2010
Parameter Estimation and Model Selection in Computational Biology.
PLoS Comput. Biol., 2010

Analysis of Stochastic Strategies in Bacterial Competence: A Master Equation Approach.
PLoS Comput. Biol., 2010

Modelling and analysis of gene regulatory network using feedback control theory.
Int. J. Syst. Sci., 2010

Performance limitations in autocatalytic networks in biology.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

Model reduction of polynomial dynamical systems using differential algebra.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

Parameter identification of biological networks using extended Kalman filtering and χ<sup>2</sup> criteria.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

2008
Estimation and Optimal Configurations for Localization Using Cooperative UAVs.
IEEE Trans. Control. Syst. Technol., 2008

The Finite State Projection Approach for the Analysis of Stochastic Noise in Gene Networks.
IEEE Trans. Autom. Control., 2008

Guest Editorial - Special Issue on Systems Biology.
IEEE Trans. Autom. Control., 2008

Using noise transmission properties to identify stochastic gene regulatory networks.
Proceedings of the 47th IEEE Conference on Decision and Control, 2008

Computation of switch time distributions in stochastic gene regulatory networks.
Proceedings of the American Control Conference, 2008

2007
A multiple time interval finite state projection algorithm for the solution to the chemical master equation.
J. Comput. Phys., 2007

Systems biology and control - A tutorial.
Proceedings of the 46th IEEE Conference on Decision and Control, 2007

Online Control Strategies for Highly Coupled Cooperative UAVs.
Proceedings of the American Control Conference, 2007

Stochastic analysis of gene regulatory networks using finite state projections and singular perturbation.
Proceedings of the American Control Conference, 2007

2006
Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System.
PLoS Comput. Biol., 2006

Advanced Methods and Algorithms for Biological Networks Analysis.
Proc. IEEE, 2006

A reduced model solution for the chemical master equation arising in stochastic analyses of biological networks.
Proceedings of the 45th IEEE Conference on Decision and Control, 2006

Coherence Resonance: A Mechanism for Noise Induced Stable Oscillations in Gene Regulatory Networks.
Proceedings of the 45th IEEE Conference on Decision and Control, 2006

2004
Structured optimal and robust control with multiple criteria: a convex solution.
IEEE Trans. Autom. Control., 2004

2001
Robust synthesis in <sub>1</sub>: a globally optimal solution.
IEEE Trans. Autom. Control., 2001

Analysis of steady-state tracking errors in sampled-data systems with uncertainty.
Autom., 2001

2000
A new approach to the solution of the l<sub>1</sub> control problem: the scaled-Q method.
IEEE Trans. Autom. Control., 2000

Calcium Homeostasis: A Feedback Control Point of View.
Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000

1998
Multi-objective MIMO optimal control design without zero interpolation.
Proceedings of the Robustness in Identification and Control, Workshop Robustness in Identification and Control, Siena, Italy, July 30, 1998

Robustness synthesis in l 1: A globally optimal solution.
Proceedings of the Robustness in Identification and Control, Workshop Robustness in Identification and Control, Siena, Italy, July 30, 1998

1993
Controller design for plants with structured uncertainty.
Autom., 1993

1992
Time-varying control and the robust performance of systems with structured norm-bounded perturbations.
Autom., 1992


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