Mustafa Khammash
Orcid: 0000-0002-4855-9220Affiliations:
- ETH Zurich, Control Theory and Systems Biology Laboratory, Basel, Switzerland
- University of California at Santa Barbara, CA, USA
- Iowa State University (ISU), Ames, IA, USA
- Rice University, Houston, TX, USA (PhD 1990)
According to our database1,
Mustafa Khammash
authored at least 124 papers
between 1992 and 2023.
Collaborative distances:
Collaborative distances:
Awards
IEEE Fellow
IEEE Fellow 2007, "For contributions to robust control and its applications".
Timeline
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Online presence:
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on bsse.ethz.ch
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on dl.acm.org
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Bibliography
2023
Annu. Rev. Control. Robotics Auton. Syst., May, 2023
SIAM J. Numer. Anal., April, 2023
2022
Stochastic filtering for multiscale stochastic reaction networks based on hybrid approximations.
J. Comput. Phys., 2022
On the Innocuousness of Deterministic p-type Antithetic Integral Controllers Arising in Integral Rein Control.
CoRR, 2022
Exploiting the Nonlinear Structure of the Antithetic Integral Controller to Enhance Dynamic Performance.
Proceedings of the 61st IEEE Conference on Decision and Control, 2022
Continuous-Time and Sampled-Data Optimal Control of Linear Stochastic Reaction Networks.
Proceedings of the 61st IEEE Conference on Decision and Control, 2022
Proceedings of the 61st IEEE Conference on Decision and Control, 2022
Padé SSA: A frequency domain method for estimating the dynamics of stochastic reaction networks.
Proceedings of the 61st IEEE Conference on Decision and Control, 2022
2021
IEEE Trans. Autom. Control., 2021
Ergodicity, Output-Controllability, and Antithetic Integral Control of Uncertain Stochastic Reaction Networks.
IEEE Trans. Autom. Control., 2021
DeepCME: A deep learning framework for computing solution statistics of the chemical master equation.
PLoS Comput. Biol., 2021
Design of a synthetic integral feedback circuit: dynamic analysis and DNA implementation.
CoRR, 2021
Proceedings of the 2021 American Control Conference, 2021
2020
IEEE Trans. Autom. Control., 2020
Ergodicity Analysis and Antithetic Integral Control of a Class of Stochastic Reaction Networks with Delays.
SIAM J. Appl. Dyn. Syst., 2020
Likelihood-free nested sampling for parameter inference of biochemical reaction networks.
PLoS Comput. Biol., 2020
Stochastic filters based on hybrid approximations of multiscale stochastic reaction networks.
Proceedings of the 59th IEEE Conference on Decision and Control, 2020
2019
Quantification of loading effects in interconnections of stochastic reaction networks.
Proceedings of the 17th European Control Conference, 2019
Bayesian Parameter Estimation for Stochastic Reaction Networks from Steady-State Observations.
Proceedings of the Computational Methods in Systems Biology, 2019
Proceedings of the 58th IEEE Conference on Decision and Control, 2019
Proceedings of the 58th IEEE Conference on Decision and Control, 2019
Optimal Parameter Tuning of Feedback Controllers with Application to Biomolecular Antithetic Integral Control.
Proceedings of the 58th IEEE Conference on Decision and Control, 2019
A linear constrained integral feedback for a class of reaction systems with absolute concentration robustness.
Proceedings of the 58th IEEE Conference on Decision and Control, 2019
2018
Estimation of Parameter Sensitivities for Stochastic Reaction Networks Using Tau-Leap Simulations.
SIAM J. Numer. Anal., 2018
Computational Identification of Irreducible State-Spaces for Stochastic Reaction Networks.
SIAM J. Appl. Dyn. Syst., 2018
In-Silico Proportional-Integral Moment Control of Stochastic Reaction Networks with Applications to Gene Expression (with Dimerization).
CoRR, 2018
Proceedings of the 57th IEEE Conference on Decision and Control, 2018
2017
CoRR, 2017
Simple interval observers for linear impulsive systems with applications to sampled-data and switched systems.
CoRR, 2017
CoRR, 2017
Robust and structural ergodicity analysis of stochastic biomolecular networks involving synthetic antithetic integral controllers.
CoRR, 2017
BMC Syst. Biol., 2017
Proceedings of the 56th IEEE Annual Conference on Decision and Control, 2017
Proceedings of the IEEE Conference on Control Technology and Applications, 2017
2016
Implementation Considerations, Not Topological Differences, Are the Main Determinants of Noise Suppression Properties in Feedback and Incoherent Feedforward Circuits.
PLoS Comput. Biol., 2016
Interval peak-to-peak observers for continuous- and discrete-time systems with persistent inputs and delays.
Autom., 2016
Approximate filtering distributions for characterizing input-output behavior of biochemical networks.
Proceedings of the 15th European Control Conference, 2016
Proceedings of the 55th IEEE Conference on Decision and Control, 2016
Robust ergodicity and tracking in antithetic integral control of stochastic biochemical reaction networks.
Proceedings of the 55th IEEE Conference on Decision and Control, 2016
2015
Proceedings of the Encyclopedia of Systems and Control, 2015
Proceedings of the Encyclopedia of Systems and Control, 2015
Proceedings of the 54th IEEE Conference on Decision and Control, 2015
2014
Automatic Crosswind Flight of Tethered Wings for Airborne Wind Energy: Modeling, Control Design, and Experimental Results.
IEEE Trans. Control. Syst. Technol., 2014
IEEE Trans. Control. Syst. Technol., 2014
Overexpression of Heat Shock Protein 72 Attenuates NF-κB Activation Using a Combination of Regulatory Mechanisms in Microglia.
PLoS Comput. Biol., 2014
PLoS Comput. Biol., 2014
A Scalable Computational Framework for Establishing Long-Term Behavior of Stochastic Reaction Networks.
PLoS Comput. Biol., 2014
Proceedings of the 22nd Mediterranean Conference on Control and Automation, 2014
Optimization-based Lyapunov function construction for continuous-time Markov chains with affine transition rates.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014
Detection of loading effects in bacterial stress response using biochemical stochasticity.
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014
2013
Unbiased Estimation of Parameter Sensitivities for Stochastic Chemical Reaction Networks.
SIAM J. Sci. Comput., 2013
PLoS Comput. Biol., 2013
SPSens: a software package for stochastic parameter sensitivity analysis of biochemical reaction networks.
Bioinform., 2013
The signal within the noise: efficient inference of stochastic gene regulation models using fluorescence histograms and stochastic simulations.
Bioinform., 2013
Efficient parameter identification for stochastic biochemical networks using a reduced-order realization.
Proceedings of the 12th European Control Conference, 2013
Automatic control of tethered wings for airborne wind energy: Design and experimental results.
Proceedings of the 12th European Control Conference, 2013
Direct numerical solution of algebraic Lyapunov equations for large-scale systems using Quantized Tensor Trains.
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013
Proceedings of the 52nd IEEE Conference on Decision and Control, 2013
Proceedings of the American Control Conference, 2013
Proceedings of the American Control Conference, 2013
2012
Simulation of stochastic systems via polynomial chaos expansions and convex optimization
CoRR, 2012
Stability analysis of quasi-polynomial dynamical systems with applications to biological network models.
Autom., 2012
A spectral methods-based solution of the Chemical Master Equation for gene regulatory networks.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012
Measurement noise distribution as a metric for parameter estimation in dynamical systems.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012
Nonlinear stochastic model predictive control via regularized polynomial chaos expansions.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012
Computer control of gene expression: Robust setpoint tracking of protein mean and variance using integral feedback.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012
2011
Quantitative characterization and analysis of the dynamic NF-kappaB response in microglia.
BMC Bioinform., 2011
Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011
Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011
Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011
Proceedings of the American Control Conference, 2011
2010
PLoS Comput. Biol., 2010
Analysis of Stochastic Strategies in Bacterial Competence: A Master Equation Approach.
PLoS Comput. Biol., 2010
Int. J. Syst. Sci., 2010
Proceedings of the 49th IEEE Conference on Decision and Control, 2010
Proceedings of the 49th IEEE Conference on Decision and Control, 2010
Parameter identification of biological networks using extended Kalman filtering and χ<sup>2</sup> criteria.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010
Proceedings of the American Control Conference, 2010
2008
IEEE Trans. Control. Syst. Technol., 2008
The Finite State Projection Approach for the Analysis of Stochastic Noise in Gene Networks.
IEEE Trans. Autom. Control., 2008
IEEE Trans. Autom. Control., 2008
Proceedings of the 47th IEEE Conference on Decision and Control, 2008
Proceedings of the American Control Conference, 2008
2007
A multiple time interval finite state projection algorithm for the solution to the chemical master equation.
J. Comput. Phys., 2007
Proceedings of the 46th IEEE Conference on Decision and Control, 2007
Proceedings of the American Control Conference, 2007
Stochastic analysis of gene regulatory networks using finite state projections and singular perturbation.
Proceedings of the American Control Conference, 2007
2006
PLoS Comput. Biol., 2006
A reduced model solution for the chemical master equation arising in stochastic analyses of biological networks.
Proceedings of the 45th IEEE Conference on Decision and Control, 2006
Coherence Resonance: A Mechanism for Noise Induced Stable Oscillations in Gene Regulatory Networks.
Proceedings of the 45th IEEE Conference on Decision and Control, 2006
2005
Proceedings of the 44th IEEE IEEE Conference on Decision and Control and 8th European Control Conference Control, 2005
Proceedings of the American Control Conference, 2005
Proceedings of the American Control Conference, 2005
2004
IEEE Trans. Autom. Control., 2004
Stochastic stability and its application to the analysis of gene regulatory networks.
Proceedings of the 43rd IEEE Conference on Decision and Control, 2004
2003
Model validation and robust stability analysis of the bacterial heat shock response using SOSTOOLS.
Proceedings of the 42nd IEEE Conference on Decision and Control, 2003
Proceedings of the American Control Conference, 2003
2002
Proceedings of the American Control Conference, 2002
Proceedings of the American Control Conference, 2002
2001
IEEE Trans. Autom. Control., 2001
Autom., 2001
Comparison of different polynomial factorization approaches as an alternative to FIR approximation to solve the ℓ1 design problem.
Proceedings of the 6th European Control Conference, 2001
Proceedings of the 40th IEEE Conference on Decision and Control, 2001
Proceedings of the 40th IEEE Conference on Decision and Control, 2001
Proceedings of the American Control Conference, 2001
Robust gain-scheduled aircraft longitudinal controller design using an H<sub>∞</sub> approach.
Proceedings of the American Control Conference, 2001
2000
A new approach to the solution of the l<sub>1</sub> control problem: the scaled-Q method.
IEEE Trans. Autom. Control., 2000
Proceedings of the 39th IEEE Conference on Decision and Control, 2000
Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000
Proceedings of the American Control Conference, 2000
1998
Proceedings of the Robustness in Identification and Control, Workshop Robustness in Identification and Control, Siena, Italy, July 30, 1998
Proceedings of the Robustness in Identification and Control, Workshop Robustness in Identification and Control, Siena, Italy, July 30, 1998
1997
IEEE Trans. Autom. Control., 1997
1996
Synthesis of globally optimal controllers for robust performance to unstructured uncertainty.
IEEE Trans. Autom. Control., 1996
1995
1993
Necessary and sufficient conditions for the robustness of time-varying systems with applications to sampled-data systems.
IEEE Trans. Autom. Control., 1993
1992
Time-varying control and the robust performance of systems with structured norm-bounded perturbations.
Autom., 1992