Helena Vitkova

According to our database, Helena Vitkova authored at least 21 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of six.
• Erdős number of five.

2024

Unveiling Diversity: Classification of Klebsiella Pneumoniae Plasmids from Long-read Assemblies.

Helena Vitkova, Marketa Nykrynova, Matej Bezdicek, Martina Lengerova

Proceedings of the Bioinformatics and Biomedical Engineering, 2024

Exploring DNA Methylation Patterns in the Core Genome of Klebsiella pneumoniae.

Marketa Nykrynova, Matej Bezdicek, Martina Lengerova, Helena Vitkova

Proceedings of the Bioinformatics and Biomedical Engineering, 2024

2023

ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing.

Robin Jugas, Helena Vitkova

BMC Bioinform., December, 2023

Bacterial phenotype prediction based on methylation site profiles.

Marketa Nykrynova, Matej Bezdicek, Martina Lengerova, Helena Skutkova

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2023

2022

Data Transformation for Clustering Utilization for Feature Detection in Mass Spectrometry.

Vojtech Barton, Helena Skutkova

Proceedings of the Bioinformatics and Biomedical Engineering, 2022

2021

Raw nanopore squiggle alignment for bacterial typing distinction enhancement.

Marketa Nykrynova, Vojtech Barton, Martin Vítek, Matej Bezdicek, Martina Lengerova, Helena Skutkova

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

MANASIG: Python Package to Manipulate Nanopore Signals From Sequencing Files.

Vojtech Barton, Markéta Nykrýnová, Helena Skutková

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Detection of Highly Variable Genome Fragments in Unmapped Reads of Escherichia coli Genomes.

Marketa Nykrynova, Vojtech Barton, Matej Bezdicek, Martina Lengerova, Helena Skutkova

Proceedings of the Bioinformatics and Biomedical Engineering, 2020

Watershed Segmentation for Peak Picking in Mass Spectrometry Data.

Vojtech Barton, Markéta Nykrýnová, Helena Skutková

Proceedings of the Bioinformatics and Biomedical Engineering, 2020

2019

Entropy-Based Detection of Genetic Markers for Bacteria Genotyping.

Marketa Nykrynova, Denisa Maderankova, Vojtech Barton, Matej Bezdicek, Martina Lengerova, Helena Skutkova

Proceedings of the Bioinformatics and Biomedical Engineering, 2019

Signal Processing Based CNV Detection in Bacterial Genomes.

Robin Jugas, Martin Vítek, Denisa Maderankova, Helena Skutkova

Proceedings of the Bioinformatics and Biomedical Engineering, 2019

Clustering of Klebsiella Strains Based on Variability in Sequencing Data.

Vojtech Barton, Marketa Nykrynova, Matej Bezdicek, Martina Lengerova, Helena Skutkova

Proceedings of the Bioinformatics and Biomedical Engineering, 2019

2018

Cross-correlation based detection of contigs overlaps.

Robin Jugas, Martin Vítek, Karel Sedlár, Helena Skutkova

Proceedings of the 41st International Convention on Information and Communication Technology, 2018

Bioinformatic Tools for Genotyping of Klebsiella pneumoniae Isolates.

Marketa Nykrynova, Denisa Maderankova, Matej Bezdicek, Martina Lengerova, Helena Skutkova

Proceedings of the Information Technology in Biomedicine, 2018

2017

The identification of replication origin in bacterial genomes by cumulated phase signal.

Denisa Maderankova, Karel Sedlár, Martin Vítek, Helena Skutkova

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017

Overlap Detection for a Genome Assembly Based on Genomic Signal Processing.

Robin Jugas, Karel Sedlár, Martin Vítek, Helena Skutkova

Proceedings of the 30th IEEE International Symposium on Computer-Based Medical Systems, 2017

2016

Set of rules for genomic signal downsampling.

Karel Sedlár, Helena Skutkova, Martin Vítek, Ivo Provazník

Comput. Biol. Medicine, 2016

2015

Bipartite graphs for metagenomic data analysis and visualization.

Karel Sedlár, Helena Skutkova, Petra Videnska, Ivan Rychlik, Ivo Provazník

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2013

Classification of genomic signals using dynamic time warping.

Helena Skutkova, Martin Vítek, Petr Babula, René Kizek, Ivo Provazník

BMC Bioinform., 2013

2012

Detection of short exons in DNA sequences using complex wavelet transform of structural features.

Ivo Provazník, Vladimira Kubicova, Helena Skutkova, Jiri Nedved, Ewaryst Tkacz, Petr Babula, René Kizek

Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

2011

Influence of sample variance on the phylogenetic reconstruction of protein sequences.

Helena Skutkova, Ivo Provazník, René Kizek

Proceedings of the 4th International Symposium on Applied Sciences in Biomedical and Communication Technologies, 2011