Jacob de Vlieg

According to our database, Jacob de Vlieg authored at least 18 papers between 2006 and 2013.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2013

Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining.

Wilco W. M. Fleuren, Erik J. M. Toonen, Stefan Verhoeven, Raoul Frijters, Tim Hulsen, Ton Rullmann, René C. van Schaik, Jacob de Vlieg, Wynand Alkema

BioData Min., 2013

2012

Pharmacophore Fingerprint-Based Approach to Binding Site Subpocket Similarity and Its Application to Bioisostere Replacement.

David J. Wood, Jacob de Vlieg, Markus Wagener, Tina Ritschel

J. Chem. Inf. Model., 2012

Comparative Analysis of Pharmacophore Screening Tools.

Marijn P. A. Sanders, Arménio Jorge Moura Barbosa, Barbara Zarzycka, Gerry A. F. Nicolaes, Jan P. G. Klomp, Jacob de Vlieg, Alberto Del Rio

J. Chem. Inf. Model., 2012

Integrated Project Views: Decision Support Platform for Drug Discovery Project Teams.

Eric J. Baede, Ernest den Bekker, Jan-Willem Boiten, Deborah Cronin, Rob van Gammeren, Jacob de Vlieg

J. Chem. Inf. Model., 2012

Flexible protein-ligand docking using the Fleksy protocol.

Markus Wagener, Jacob de Vlieg, Sander B. Nabuurs

J. Comput. Chem., 2012

Quantum mechanical polar surface area.

Gijs Schaftenaar, Jacob de Vlieg

J. Comput. Aided Mol. Des., 2012

2011

GPCRDB: information system for G protein-coupled receptors.

Bas Vroling, Marijn P. A. Sanders, Coos Baakman, Annika Borrmann, Stefan Verhoeven, Jan P. G. Klomp, Laerte Oliveira, Jacob de Vlieg, Gert Vriend

Nucleic Acids Res., 2011

CoPub update: CoPub 5.0 a text mining system to answer biological questions.

Wilco W. M. Fleuren, Stefan Verhoeven, Raoul Frijters, Bart Heupers, Jan Polman, René C. van Schaik, Jacob de Vlieg, Wynand Alkema

Nucleic Acids Res., 2011

Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs.

Marijn P. A. Sanders, Stefan Verhoeven, Chris de Graaf, Luc Roumen, Bas Vroling, Sander B. Nabuurs, Jacob de Vlieg, Jan P. G. Klomp

J. Chem. Inf. Model., 2011

Extraction of useful bioisostere replacments from the PDB.

Tina Ritschel, David J. Wood, Jacob de Vlieg, Markus Wagener

J. Cheminformatics, 2011

ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs.

Marijn P. A. Sanders, Wilco W. M. Fleuren, Stefan Verhoeven, Sven van den Beld, Wynand Alkema, Jacob de Vlieg, Jan P. G. Klomp

BMC Bioinform., 2011

2010

Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases.

Raoul Frijters, Marianne van Vugt, Ruben Smeets, René C. van Schaik, Jacob de Vlieg, Wynand Alkema

PLoS Comput. Biol., 2010

Fleksy: a flexible approach to induced fit docking.

Markus Wagener, Sander B. Nabuurs, Jacob de Vlieg

J. Cheminformatics, 2010

Integrating gene expression and GO classification for PCA by preclustering.

Jorn R. de Haan, Ester Piek, René C. van Schaik, Jacob de Vlieg, Susanne Bauerschmidt, Lutgarde M. C. Buydens, Ron Wehrens

BMC Bioinform., 2010

2009

PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood.

Tim Hulsen, Peter M. A. Groenen, Jacob de Vlieg, Wynand Alkema

Nucleic Acids Res., 2009

2008

CoPub: a literature-based keyword enrichment tool for microarray data analysis.

Raoul Frijters, Bart Heupers, Pieter van Beek, Maurice Bouwhuis, René C. van Schaik, Jacob de Vlieg, Jan Polman, Wynand Alkema

Nucleic Acids Res., 2008

2006

Testing statistical significance scores of sequence comparison methods with structure similarity.

Tim Hulsen, Jacob de Vlieg, Jack A. M. Leunissen, Peter M. A. Groenen

BMC Bioinform., 2006

PhyloPat: phylogenetic pattern analysis of eukaryotic genes.

Tim Hulsen, Jacob de Vlieg, Peter M. A. Groenen

BMC Bioinform., 2006