James C. Costello

According to our database, James C. Costello authored at least 13 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

AI Competitions and Benchmarks: The life cycle of challenges and benchmarks.

Gustavo Stolovitzky, Julio Saez-Rodriguez, Julie Bletz, Jacob Albrecht, Gaia Andreoletti, James C. Costello, Paul C. Boutros

CoRR, 2023

2022

SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses.

Alexandra J. Lee, Dallas L. Mould, Jake Crawford, Dongbo Hu, Rani K. Powers, Georgia Doing, James C. Costello, Deborah A. Hogan, Casey S. Greene

Genom. Proteom. Bioinform., October, 2022

2018

Simulating heterogeneous populations using Boolean models.

Brian C. Ross, Mayla Boguslav, Holly Weeks, James C. Costello

BMC Syst. Biol., 2018

GSEA-InContext: identifying novel and common patterns in expression experiments.

Rani K. Powers, Andrew Goodspeed, Harrison Pielke-Lombardo, Aik Choon Tan, James C. Costello

Bioinform., 2018

2017

A Spatiotemporal Model to Simulate Chemotherapy Regimens for Heterogeneous Bladder Cancer Metastases to the Lung.

Kimberly R. Kanigel Winner, James C. Costello

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2015

DREAMTools: a Python package for scoring collaborative challenges.

Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez

F1000Research, 2015

2009

All Human-Specific Gene Losses Are Present in the Genome as Pseudogenes.

Daniel R. Schrider, James C. Costello, Matthew W. Hahn

J. Comput. Biol., 2009

Data-Driven Ontologies.

James C. Costello, Daniel R. Schrider, Jeff Gehlhausen, Mehmet M. Dalkilic

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

Limitations of Pseudogenes in Identifying Gene Losses.

James C. Costello, Mira V. Han, Matthew W. Hahn

Proceedings of the Comparative Genomics, International Workshop, 2008

2007

Using Drosophila melanogaster Data to Discover Disease-Related Protein Interactions in Humans.

James C. Costello, Jade E. Buchanan-Carter, Mehmet M. Dalkilic, Justen Andrews

Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

2006

Using Compression to Identify Classes of Inauthentic Texts.

Mehmet M. Dalkilic, Wyatt T. Clark, James C. Costello, Predrag Radivojac

Proceedings of the Sixth SIAM International Conference on Data Mining, 2006

2004

TREC 2004 Genomics Track Experiments at IUB.

Kazuhiro Seki, James C. Costello, Vasanth R. Singan, Javed Mostafa

Proceedings of the Thirteenth Text REtrieval Conference, 2004

Semantic thumbnails: a novel method for summarizing document collections.

Arijit Sengupta, Mehmet M. Dalkilic, James C. Costello

Proceedings of the 22nd Annual International Conference on Design of Communication: The Engineering of Quality Documentation, 2004