Jonathan R. Karr

According to our database1, Jonathan R. Karr authored at least 13 papers between 2008 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

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On csauthors.net:

Bibliography

2020
Exact Parallelization of the Stochastic Simulation Algorithm for Scalable Simulation of Large Biochemical Networks.
CoRR, 2020

Structured spreadsheets with ObjTables enable data reuse and integration.
CoRR, 2020

2016
Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Engineering, 2016

Guidelines for Reproducibly Building and Simulating Systems Biology Models.
IEEE Trans. Biomed. Engineering, 2016

Toward Scalable Whole-Cell Modeling of Human Cells.
Proceedings of the 2016 annual ACM Conference on SIGSIM Principles of Advanced Discrete Simulation, 2016

2015
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.
PLoS Computational Biology, 2015

A combined systems and structural modeling approach repositions antibiotics for Mycoplasma genitalium.
Comput. Biol. Chem., 2015

NetworkPainter: dynamic intracellular pathway animation in Cytobank.
BMC Bioinform., 2015

Causal Inference in Biology Networks with Integrated Belief Propagation.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions.
Database, 2014

2013
WholeCellKB: model organism databases for comprehensive whole-cell models.
Nucleic Acids Res., 2013

WholeCellViz: data visualization for whole-cell models.
BMC Bioinform., 2013

2008
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli.
Bioinform., 2008


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