James J. Collins

According to our database, James J. Collins authored at least 7 papers between 1994 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Discovery of a structural class of antibiotics with explainable deep learning.

Felix Wong, Erica J. Zheng, Jacqueline A. Valeri, Nina M. Donghia, Melis N. Anahtar, Satotaka Omori, Alicia Li, Andres Cubillos-Ruiz, Aarti Krishnan, Wengong Jin, Abigail L. Manson, Jens Friedrichs, Ralf Helbig, Behnoush Hajian, Dawid K. Fiejtek, Florence F. Wagner, Holly H. Soutter, Ashlee M. Earl, Jonathan M. Stokes, Lars D. Renner, James J. Collins

Nat., February, 2024

2021

Deep learning identifies synergistic drug combinations for treating COVID-19.

Wengong Jin, Jonathan M. Stokes, Richard T. Eastman, Zina Itkin, Alexey V. Zakharov, James J. Collins, Tommi S. Jaakkola, Regina Barzilay

Proc. Natl. Acad. Sci. USA, 2021

2016

Ribocomputing devices for sophisticated in vivo logic computation.

Alexander A. Green, Jongmin Kim, Duo Ma, Pamela A. Silver, James J. Collins, Peng Yin

Proceedings of the 3rd ACM International Conference on Nanoscale Computing and Communication, 2016

2014

Epigenetic Landscapes Explain Partially Reprogrammed Cells and Identify Key Reprogramming Genes.

Alex H. Lang, Hu Li, James J. Collins, Pankaj Mehta

PLoS Comput. Biol., 2014

2005

Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology.

James J. Collins

Proceedings of the Research in Computational Molecular Biology, 2005

2004

Robust Identification of Large Genetic Networks.

Diego di Bernardo, Timothy S. Gardner, James J. Collins

Proceedings of the Biocomputing 2004, 2004

1994

Visualizing the effects of filtering chaotic signals.

Michael T. Rosenstein, James J. Collins

Comput. Graph., 1994